Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3075 ATGTTGGTGGATTCAGTAATCGGCAGAGAAGAGAAGAAAGAGAAAGCGGGTGTGAGCTGGAGAGAGAGAGAAGGCAGGAAAAAGATGGGAAGAGGGAAAATAGAGATGAGGAAGATAGAGAATTTGAATAGCAGGCAAGTCACCTTCTCCAAGCGGCGCAATGGCCTCCTCAAAAAAGCCAAGGAATTGTCCGTTCTCTGCGACGCCGAGGTCGCCGTCATCGTTTTCTCTTCCACCGGAAAACTTTATGAGTTCTCCAGCAAAAGGTCCTTTCACAACACCTTCTCTCTCTCTTTTCCTTTGATCTCAATGTCTGATCCAGACCTTCTGAGGCATGAAATAACAAAACTTCACTCTGCATGCTTAAGGATGATGGGTAAGGAGCTTGATGGATTGAACTTCAAAGAACTGCAGCAGCTTGAAAGTCAACTTAGTGAAGGAATTCTATCAGTTAAAAACAAAAAGGAACAAGTACTTCTAGAGCAACTGAGGAGCTCCAGAGTAGAGGAGGAAAAGGTTACAGAGGAGAATGAAACCCTGCGCAAACAGGTTCCAAACTTGGAAGAGGATTTTGGTCAAGAAGCAGCTAAATATTTGAAATGA 603 0.4395 MLVDSVIGREEKKEKAGVSWREREGRKKMGRGKIEMRKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIVFSSTGKLYEFSSKRSFHNTFSLSFPLISMSDPDLLRHEITKLHSACLRMMGKELDGLNFKELQQLESQLSEGILSVKNKKEQVLLEQLRSSRVEEEKVTEENETLRKQVPNLEEDFGQEAAKYLK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3075 200 Coils Coil 137 157 - -
Bisa07g3075 200 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677|GO:0046983
Bisa07g3075 200 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Bisa07g3075 200 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Bisa07g3075 200 SMART madsneu2 29 88 IPR002100 GO:0003677|GO:0046983
Bisa07g3075 200 MobiDBLite consensus disorder prediction 1 27 - -
Bisa07g3075 200 ProSiteProfiles MADS-box domain profile. 29 89 IPR002100 GO:0003677|GO:0046983
Bisa07g3075 200 ProSiteProfiles K-box domain profile. 100 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa07g3075 200 Coils Coil 163 190 - -
Bisa07g3075 200 ProSitePatterns MADS-box domain signature. 31 85 IPR002100 GO:0003677|GO:0046983
Bisa07g3075 200 Pfam K-box region 110 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa07g3075 200 PANTHER SERUM RESPONSE FACTOR HOMOLOG 29 169 - -
Bisa07g3075 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 85 IPR002100 GO:0003677|GO:0046983
Bisa07g3075 200 SUPERFAMILY SRF-like 30 96 IPR036879 GO:0003677|GO:0046983
Bisa07g3075 200 CDD MADS_MEF2_like 30 88 IPR033896 GO:0000977|GO:0045944
Bisa07g3075 200 Gene3D - 41 99 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3075 Bisa-ChrBisa07 64848962 64854242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g3075 29 184 MADS-box Gene Family AT3G57390 51.685 1.53e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa07g3075 K-box 4.7e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g3075 07 64848962 64854242 Bisa07g3075 07 64848962 64854242 ECH