Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g3055 ATGTTTTTTCCTCCGAATCAATATGAGCACGATCAGGCCATGGAAGACTCGGATCAAAGCAGACCTCCTTATTCGGCGCAGTTAAGTCGACAGCCTCAGATAGGGTCAGCTCATCAGAAATTGTTCGGAGACACTTCTGGGAAAGATTTTTTTGCCACGGCTTCGGAATCTGCATCGCCAGTTAACATCATCGTCACTCCAGTCATCTTGCCTATCAATTGCAGTTTTAAAGTCTTTATGACAATGCAGAATCACTCTTCTTCTTTGAGATCAACGTTTCCTGTATCTGGAGGTGCAAATGCAAAAACGCCGAGCCGGAATTGTGAAACAGTGAGAGGAACCAAAGTCGCAGTGACGCAAAAGCAAGTATCGCCGGAAGCAGCCGAGTTTCTCCAAGGGCTCTCTCTTCCTTCTGCTTTTCAATCAGGCATTATGGAAGCCGAGGAAGAAAAAGTTACAACTACTTCTGCAGAAACCTCTAACCCAGACTCTGATGGTCAAAACCTGGTTTCTCCTGTTCATGCAATGATGCCCCCACCAATACAACCTATAATTCCGGCAGTGGTTCCACCTTCTGTTGTGCCCCCTATGGCTCCAATTCCTACAGTTCCTCCTCCCACTGCTCTCCGCCCATTGGCACCGCTTCCTGTTCGGCCACATCCTATTAGGCCGCCAGTGTCGCAAAATGGTGAGGTTGGATCGTCTGACTCTGATTCAGATAATGATGAGTCCGGCCCTGGAATTAACAAGGGTACAGGTGAGTATGAGATATCAGAAGAGAGTAGACTGGTAAGGGAGCGGCAGGAAAAAGCAATGCAGGAACTCATGATGAAGAGGCGTGCTGCTGCTTTAGCCGTTCCTACGAATGACATGGCAGTGCGAGCTCGTCTTCGCCGTCTTGGTGAACCCATCACACTTTTCGGTGAAAGGGAGATGGAAAGAAGAGATAGGTTGCGAATGATTATGGCAAAGCTGGATGCTGAAGGTCAGCTGGAAAAGCTGATGAAAGCTCATGAAGATGAAGAGGCTGCAGCTTCTGCAGCAAAAGATGAATCTGAGGAAGAAATACAGTATCCCTTTTACACTGAAGGGTCAAAGGCCCTCCTGGATGCCAGAATTGATATTGCTAAGTATTCTTTAGTAAGAGCAGCAACACGTCTTCAACGTGCCCGTAGAAGAAGAGACGATCCAGATGAAGATATAGATGCAGAAATAGATTGGGCATTAAAGCAGGCAGAGAACTTGGTTCTTGATTGCAGTGAGATTGGAGATGATCGGCCACTTTCTGGTTGCTCCTTCTCTTCAGATGGAAAATGGCTTGCTACGTGTTCTCTAACTGGAGCTGCAAAGATATGGAGCATGCCTGAAGTTAAAAGATTTTCTACCTTAAAGGGGCACACAGAGCGTGCTACTGATGTTGTTTACTCTCCTGTGCATAACCATTTAGCAACTGCCTCTGCGGATCGTACTGCAAGGTATTGGAATGACCAAGGATCTCTCTTGAAGACATTTGAGGGTCATCTTGACCGTATGGCTCGCATTTCCTTCCATCCATCAGGAAAGTACCTGGGTACTGCTAGCTTTGACAAGACATGGAGATTGTGGGACATAGAAACAGGGGAGGAGTTGCTTCTCCAAGAAGGTCACAGTAGAAGTGTATATGGTTTAGCTTTCCACCATGATGGATCATTAGCTGCTTCTTGTGGACTGGATTCACTGGCTCGTGTTTGGGACCTTCGTACTGGGAGAAGTATTCTTGCACTGGAAGGTCATGTCAAGCCGGTTCTTGGCATCAGCTTTTCACCTAATGGATATCATTTAGCCACAGGTGGTGAAGACAACACTTGTCGCATTTGGGATTTGAGGAAGAAGAAATCCTTGTACGTCATTCCAGCTCACTCTAATTTAATCTCTCAAGTCAAATTTGAGCCACAAGAAGGTTACTTTTTGGTGACAGCCTCATATGATATGACAGCGAAGGTTTGGTCAGCCCGTGATTTCAAGCCTGTCAAAACATTATCTGGGCATGAAGCAAAAGTTACATCTCTGGATATTCTCGGAGATGGACGGTATATTGCTACTGTCTCCCATGATCGAACTATAAAGCTATGGTCCAGTAACATGGTTACTGAACAAGCTATGGATGTTGACTGA 2154 0.4605 MFFPPNQYEHDQAMEDSDQSRPPYSAQLSRQPQIGSAHQKLFGDTSGKDFFATASESASPVNIIVTPVILPINCSFKVFMTMQNHSSSLRSTFPVSGGANAKTPSRNCETVRGTKVAVTQKQVSPEAAEFLQGLSLPSAFQSGIMEAEEEKVTTTSAETSNPDSDGQNLVSPVHAMMPPPIQPIIPAVVPPSVVPPMAPIPTVPPPTALRPLAPLPVRPHPIRPPVSQNGEVGSSDSDSDNDESGPGINKGTGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEEAAASAAKDESEEEIQYPFYTEGSKALLDARIDIAKYSLVRAATRLQRARRRRDDPDEDIDAEIDWALKQAENLVLDCSEIGDDRPLSGCSFSSDGKWLATCSLTGAAKIWSMPEVKRFSTLKGHTERATDVVYSPVHNHLATASADRTARYWNDQGSLLKTFEGHLDRMARISFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYVIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSLDILGDGRYIATVSHDRTIKLWSSNMVTEQAMDVD 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g3055 717 Coils Coil 324 355 - -
Bisa07g3055 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 673 705 IPR001680 GO:0005515
Bisa07g3055 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 463 495 IPR001680 GO:0005515
Bisa07g3055 717 MobiDBLite consensus disorder prediction 228 246 - -
Bisa07g3055 717 ProSitePatterns Trp-Asp (WD) repeats signature. 565 579 IPR019775 -
Bisa07g3055 717 Gene3D - 405 589 IPR015943 GO:0005515
Bisa07g3055 717 SUPERFAMILY WD40 repeat-like 420 704 IPR036322 GO:0005515
Bisa07g3055 717 ProSitePatterns Trp-Asp (WD) repeats signature. 523 537 IPR019775 -
Bisa07g3055 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 622 - -
Bisa07g3055 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 504 541 - -
Bisa07g3055 717 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 403 587 - -
Bisa07g3055 717 SMART WD40_4 623 663 IPR001680 GO:0005515
Bisa07g3055 717 SMART WD40_4 456 495 IPR001680 GO:0005515
Bisa07g3055 717 SMART WD40_4 412 453 IPR001680 GO:0005515
Bisa07g3055 717 SMART WD40_4 581 620 IPR001680 GO:0005515
Bisa07g3055 717 SMART WD40_4 497 536 IPR001680 GO:0005515
Bisa07g3055 717 SMART WD40_4 539 578 IPR001680 GO:0005515
Bisa07g3055 717 SMART WD40_4 666 705 IPR001680 GO:0005515
Bisa07g3055 717 SUPERFAMILY PRP4-like 271 326 IPR036285 -
Bisa07g3055 717 PRINTS G protein beta WD-40 repeat signature 523 537 IPR020472 -
Bisa07g3055 717 PRINTS G protein beta WD-40 repeat signature 482 496 IPR020472 -
Bisa07g3055 717 PRINTS G protein beta WD-40 repeat signature 607 621 IPR020472 -
Bisa07g3055 717 SMART pr04_2 288 341 IPR014906 -
Bisa07g3055 717 MobiDBLite consensus disorder prediction 154 168 - -
Bisa07g3055 717 MobiDBLite consensus disorder prediction 147 169 - -
Bisa07g3055 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 463 495 - -
Bisa07g3055 717 ProSitePatterns Trp-Asp (WD) repeats signature. 607 621 IPR019775 -
Bisa07g3055 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 630 663 - -
Bisa07g3055 717 Gene3D - 590 715 IPR015943 GO:0005515
Bisa07g3055 717 PANTHER WD40 REPEAT PROTEIN 238 706 - -
Bisa07g3055 717 CDD WD40 427 705 - -
Bisa07g3055 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 545 IPR001680 GO:0005515
Bisa07g3055 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 630 672 IPR001680 GO:0005515
Bisa07g3055 717 Gene3D - 264 333 IPR036285 -
Bisa07g3055 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 546 583 - -
Bisa07g3055 717 Pfam WD domain, G-beta repeat 586 620 IPR001680 GO:0005515
Bisa07g3055 717 Pfam WD domain, G-beta repeat 498 536 IPR001680 GO:0005515
Bisa07g3055 717 Pfam WD domain, G-beta repeat 429 453 IPR001680 GO:0005515
Bisa07g3055 717 Pfam WD domain, G-beta repeat 668 705 IPR001680 GO:0005515
Bisa07g3055 717 Pfam WD domain, G-beta repeat 547 578 IPR001680 GO:0005515
Bisa07g3055 717 Pfam WD domain, G-beta repeat 461 495 IPR001680 GO:0005515
Bisa07g3055 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 587 IPR001680 GO:0005515
Bisa07g3055 717 MobiDBLite consensus disorder prediction 211 261 - -
Bisa07g3055 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 673 705 - -
Bisa07g3055 717 MobiDBLite consensus disorder prediction 1 36 - -
Bisa07g3055 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 629 IPR001680 GO:0005515
Bisa07g3055 717 MobiDBLite consensus disorder prediction 18 36 - -
Bisa07g3055 717 Pfam pre-mRNA processing factor 4 (PRP4) like 293 319 IPR014906 -
Bisa07g3055 717 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 631 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g3055 Bisa-ChrBisa07 64470922 64491845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g3055 508 704 U-box Gene Family AT2G33340 23.529 3.32e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g3055 07 64470922 64491845 Bisa07g3055 07 64470922 64491845 ECH