Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2993 ATGGAAGAAGATGGCGAATTCATTGACCCTACAGACTCTTACTCCCAAGGTTCACAGTCATTATCGTCTTCGTCCGACATTTACCTGCTTGGCTTTGTCATTGCCAACATTGTTGGTCTCAAACACTATTCCGGTATCATCAGTGGCCGTGAAATGGTAGGTCTGGTTCGTGAACCTCTCAATCCCTACGATGAAAACGCCATAAAGGTCCTCAACACTCGCACCGTTCAGGTCGGACATATTGAGCGCCCCGTCGCAGCCGTACTGTCTCCTTTGATCGACTCCAACCTCATTACTGTTGAAGGCATTGTGCCCAAAACTCGCGCTCGTAACCAATTCAAGATTCCTTGCCAAATTCACATCTTTGCGGCGATTGAGTCTTTTCCAACTGTGAAAGATGTGATTTCAGAAGGCGGGTTATCTTTAATTCTGGAATCTGATGCATCGTTTACCTTGTCAGAGTCTATGGCTGTTAAAGAGAGAAGGTCTAAGAAAGAGTTTAAGACTGTAGATGAGATTTTTAAGTTGGTTGATCAGAACGTCAGAAAAGGGTGTGCGTTGGAAGCGTTGGAGCCCCCAAGAAGTGTCATTAAGTCTGAACTTTTTCGACATCAAAAGGAAGGGTTGTGGTGGTTAGCTCATAGGGAGAATTCCGGTGAATTGCCGCCATTTTGGGAAGAGAAGGATGGAGCCTATGTGAATGTTTTGACTAATTATCATACGGATAGAAGGCCAGAGCCTTTGCGAGGTGGTATTTTAGCAGATGATATGGGATTGGGCAAGACTTTAGTTTTACTTTCTTTAATTGCTTTCGATAAGGATCCTAATGCTCAAAACATGGACGGAGGGTTGCATGATGGAATGGGAGAGCAGGATGAAGTATTCTCTGTTTCGGGTGGTAAAAAGGGTAAGAAGAGAGGAACAAATAAAGAGGCCACTGGGTCACAAAAAAGACGCAAGACTGGAAGTACTTCAGGGGTCCATGTTAACGAAAAATCTGTTGTTTCAGATGGCATATCGTCAACTGACATGGATATAAAGACAACATTGGTTGTATGTCCCCCTTCTGTATTTTCAACATGGATAACACAGCTAGAAGAACATACTGAACCGGGCACACTGAAGACGTATATGTATTATGGTGATAAAAGGACAAAGGATCCTGAGGAACTTAAGATGTATGATTTAGTTTTAACCACATATACCACTTTATCTGTTGAAGAAAATTGGCATTCACCGTTAAAGAAAGTAGAGTGGTGGAGAATCATTTTGGATGAGGCACATGTAATTAAGAATACCAGTGCTCAACAAAGTCGAGCTGTCATGAATATGATAGCTGGGCGAAGGTGGGCTGTCACAGGGACACCAATTCAAAATGGCTCATATGATTTATTTTCTCTTATGGCATTTTTACGCTTTGAACCATTTTCAATAAAAAGCTATTGGCAGAGCTTGGTGCAACGTCCTCTTGCTCAGAACGACATCAAAGGACTCTCACGTTTGCAGGCTTTGATGGCAACAATTTCATTGCGAAGAACAAAAGAAAAAGCATTGATAGGATTGCCTCCAAAAACAATAGAGACGTGTTATGTTGAACTTCTTGGGGAAGAACGTGAGCTGTATGATGAAATGGAAATGGAAGCAAAGAACGTAGTGCGGAACTATATAAATAATGGACGTCTAATGCGTTACTATTCCACTGTACTTGGTATAATTTTACGGCTTCGCCAAATTTGTACTGATATGGCATTGTGCCCTTCAGATCTCAAATCTCTACTCCCTTCAAATAAGATTGAAGATGTTTCCAATAACCCGGAGTTGCTACAAAAGCTGGTTGAGATGCTGCAAGATGGTGAAGATTTTGATTGTCCAATATGTATTTCTCCGCCAACTGAGGTCGTAATTACCAACTGTGCTCACATTTTCTGTCGAGCCTGTATCCTGAAAACTCTACAGCGCAGCAAAGCCTGTTGTCCCCTTTGTCGTCAACCCCTTTCAGAATCTGACTTGTTCTCGGCCCCTCCTCAATCTTCTGAGAATGATAATGCTGGATTACCCTCAGCCGGAGCACGCTTATCTCCTAAAGTGTCTGCTCTGATAAAACTTCTTGTAGCCTCAAGGGATCGACATCCAGCCAAAAAATCAGTTGTGTTCTCACAGTTTCGTAAGATGCTGATTTTACTGGAAGAGCCACTGAAAGCGGCTGGTTTCAAGACACTGCGTCTTGATGGTACCATGAATGCCAAACGAAGGGCTCAAGTTATCGAGGATTTTGGAGCCCCAGGAAATGACAGGCCCATGGTTCTGCTTGCAAGCCTCAAGGCTTCAGGTACTGGGATAAATCTCACAGCTGCCTCGAGAGTGTACTTGTTGGAGCCATGGTGGAACCCGGCAGTTGAGGAACAAGCAATGGATCGAGTGCACCGCATTGGACAGAAAGAGGATGTGAAGATTGTGAGACTAATTGCTAAAAACAGCATCGAAGAGAGAATAGTGCAGTTGCAGGAGAAGAAGAAGCAACTTGCAAGGGAAGCATTTGGAAAGAGGGGAGCAAAGCTTTGTCGTGATGTTAATGAAGATGATCTCCGTATCCTGATGTCCTTGTAA 2607 0.4334 MEEDGEFIDPTDSYSQGSQSLSSSSDIYLLGFVIANIVGLKHYSGIISGREMVGLVREPLNPYDENAIKVLNTRTVQVGHIERPVAAVLSPLIDSNLITVEGIVPKTRARNQFKIPCQIHIFAAIESFPTVKDVISEGGLSLILESDASFTLSESMAVKERRSKKEFKTVDEIFKLVDQNVRKGCALEALEPPRSVIKSELFRHQKEGLWWLAHRENSGELPPFWEEKDGAYVNVLTNYHTDRRPEPLRGGILADDMGLGKTLVLLSLIAFDKDPNAQNMDGGLHDGMGEQDEVFSVSGGKKGKKRGTNKEATGSQKRRKTGSTSGVHVNEKSVVSDGISSTDMDIKTTLVVCPPSVFSTWITQLEEHTEPGTLKTYMYYGDKRTKDPEELKMYDLVLTTYTTLSVEENWHSPLKKVEWWRIILDEAHVIKNTSAQQSRAVMNMIAGRRWAVTGTPIQNGSYDLFSLMAFLRFEPFSIKSYWQSLVQRPLAQNDIKGLSRLQALMATISLRRTKEKALIGLPPKTIETCYVELLGEERELYDEMEMEAKNVVRNYINNGRLMRYYSTVLGIILRLRQICTDMALCPSDLKSLLPSNKIEDVSNNPELLQKLVEMLQDGEDFDCPICISPPTEVVITNCAHIFCRACILKTLQRSKACCPLCRQPLSESDLFSAPPQSSENDNAGLPSAGARLSPKVSALIKLLVASRDRHPAKKSVVFSQFRKMLILLEEPLKAAGFKTLRLDGTMNAKRRAQVIEDFGAPGNDRPMVLLASLKASGTGINLTAASRVYLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIAKNSIEERIVQLQEKKKQLAREAFGKRGAKLCRDVNEDDLRILMSL 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2993 868 ProSiteProfiles Zinc finger RING-type profile. 623 662 IPR001841 -
Bisa07g2993 868 SMART HIRAN_2 30 125 IPR014905 GO:0003676|GO:0008270|GO:0016818
Bisa07g2993 868 SUPERFAMILY RING/U-box 606 668 - -
Bisa07g2993 868 Gene3D - 329 513 IPR038718 -
Bisa07g2993 868 CDD SF2_C_SNF 692 822 - -
Bisa07g2993 868 SMART ring_2 623 661 IPR001841 -
Bisa07g2993 868 Pfam Zinc finger, C3HC4 type (RING finger) 620 667 - -
Bisa07g2993 868 Gene3D - 177 282 IPR038718 -
Bisa07g2993 868 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 155 866 - -
Bisa07g2993 868 SMART helicmild6 726 811 IPR001650 -
Bisa07g2993 868 Pfam Helicase conserved C-terminal domain 695 811 IPR001650 -
Bisa07g2993 868 SMART ultradead3 197 481 IPR014001 -
Bisa07g2993 868 MobiDBLite consensus disorder prediction 280 334 - -
Bisa07g2993 868 Pfam SNF2-related domain 204 582 IPR000330 GO:0005524|GO:0140658
Bisa07g2993 868 CDD RING-HC_HLTF 618 670 - -
Bisa07g2993 868 Gene3D - 22 142 - -
Bisa07g2993 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 687 IPR013083 -
Bisa07g2993 868 MobiDBLite consensus disorder prediction 297 317 - -
Bisa07g2993 868 Gene3D - 522 867 IPR027417 -
Bisa07g2993 868 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 698 863 IPR001650 -
Bisa07g2993 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 860 IPR027417 -
Bisa07g2993 868 Coils Coil 824 844 - -
Bisa07g2993 868 ProSitePatterns Zinc finger RING-type signature. 638 647 IPR017907 -
Bisa07g2993 868 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 242 474 IPR014001 -
Bisa07g2993 868 MobiDBLite consensus disorder prediction 1 21 - -
Bisa07g2993 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 512 IPR027417 -
Bisa07g2993 868 Pfam HIRAN domain 31 120 IPR014905 GO:0003676|GO:0008270|GO:0016818
Bisa07g2993 868 MobiDBLite consensus disorder prediction 318 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2993 Bisa-ChrBisa07 63390760 63395586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2993 1 868 RAD5 or RAD16-like Gene Family AT5G05130 65.212 0.0 1122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa07g2993 SNF2_N 1.2e-72 CL0023