Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2939 ATGTGGCCGATCGGATCCGACAGCGTTTTCAAGCAATACGGTGAAATTGAAGATTACAAAGCCGTATGTGATAAGGTGTCAGGGAAATCCAAGGGCTATGGTTTCATCCTCTTCAAGTCGCGTCGTGGAGCTCGTAATGCGCTGAAGCAACCCCAGAAGAAGATTGGGAACCGGATGGCGGCCTGCCAGCTGGCTTCGATTGGTCCGGTTCAACAACCAACAGCCGCCCAACCAACTCCAGCACCACCCGTATCAGAGTATACTCAAAGGAAGATTTACGTTAGCAATGTTGGGGCCGATTTGGATACTCAGAAGTTGCGTATGTTTTTTTCGAAGTTTGGGGAGATAGAGGAAGGGCCATTGGGGCTTGATCAGCTGACTGGGAAACCAAAAGGGTTCTGCTTGTTCGTGTACAAGAGCACTGAGACTGCCAGAAAGGCGTTGGCTGAGCCTCACAAGGATTTTGATGGCCGTATTTTGCACTGTCAGAAGGCCATAGATGGTCCAAAGCCAGGAAAGTTTCAATATCAGCAACATCCGAATTTTCAGAGAACTCAGTTCCAGAGAAATGAGAACCCTACACTTGTCGGTGGGGTTGCCAGCGGACCAGGGCATCTAATGGCGCCAGCGGGTCCAGGAATTGGATTTAACCAGGGGGCAGCGGCTGCACAGACACTGAACCCAGCTCTTGGGCAGGCATTGACAGCACTGCTTACTAGTCAAGGTGCTGGCTTGGGGCTGACTAACTTATTGGGAACTCTAGGATCAGCTGCAGCAGTAAACCCAGGTGTTCCTGCTTCAGGCCAGGGAATGCAGGGTGGACACAGTAACCAACATAATGTCGTTGGAGGATATGGAAATCAAAGTCTCTTACAGGGGACATATCCAAACCAGCAGATGGGACAAAGTGGCTCTGTAAGAGGGCAGCATGCTGTTGGGCAATATGGTGGCGTTGCCCCTTACATGGGGGGGCGCTAG 978 0.5123 MWPIGSDSVFKQYGEIEDYKAVCDKVSGKSKGYGFILFKSRRGARNALKQPQKKIGNRMAACQLASIGPVQQPTAAQPTPAPPVSEYTQRKIYVSNVGADLDTQKLRMFFSKFGEIEEGPLGLDQLTGKPKGFCLFVYKSTETARKALAEPHKDFDGRILHCQKAIDGPKPGKFQYQQHPNFQRTQFQRNENPTLVGGVASGPGHLMAPAGPGIGFNQGAAAAQTLNPALGQALTALLTSQGAGLGLTNLLGTLGSAAAVNPGVPASGQGMQGGHSNQHNVVGGYGNQSLLQGTYPNQQMGQSGSVRGQHAVGQYGGVAPYMGGR 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2939 325 SUPERFAMILY RNA-binding domain, RBD 9 72 IPR035979 GO:0003676
Bisa07g2939 325 Gene3D - 69 198 IPR012677 -
Bisa07g2939 325 PANTHER GEO13361P1-RELATED 9 70 - -
Bisa07g2939 325 Gene3D - 7 68 IPR012677 -
Bisa07g2939 325 SMART rrm1_1 4 63 IPR000504 GO:0003723
Bisa07g2939 325 SMART rrm1_1 91 163 IPR000504 GO:0003723
Bisa07g2939 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 58 IPR000504 GO:0003723
Bisa07g2939 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Bisa07g2939 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 179 IPR000504 GO:0003723
Bisa07g2939 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 67 IPR000504 GO:0003723
Bisa07g2939 325 SUPERFAMILY RNA-binding domain, RBD 72 189 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2939 Bisa-ChrBisa07 62628246 62629302 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2939 8 69 C2H2 Transcription Factor Family AT2G19380 53.226 9.45e-17 79.0