Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2936 ATGGGGAGGAAGCGAAAGCTTACGCCAAAATCTGCCGAATCCGTGGAACCCCCACTGAAGCAATGTTATCAACAACAACTAGAGCAGTTTGAGCCAGAAGTGGAGCAAATTGTTGAAGACCAAGAAAATGGAGCTGAGTTCGAAAAAGTTGAAGAAGTGGAAGAAGAAGAGGAGGTAGAAGATGAAGAAGTAGAAGAAGAGGAGGAAGAGGAGGAGGAGGAGGAACAACAAGAGCCAGCGCAAAATACGAATGATCTGGCAGCCAAGGCCCAGTCGACATCGACGGCGGCAACGTCAGGGACAGTTCAATATGAAAAGGACGACGACGACGAGGAGCCGATGTATAAGCTTCTGGAACCGTTCAGCAAGGAACAAATTGTGAATCTGCTATGCGAAGCAGCGAATAAACACCGCGATGTGGCCGATCGGATCCGACAGGTAGCTGATGAGGACCCCGTTCATCGGAAAATCTTCGTACACGGCCTCGGATGGGACACAAACGCGGAGACTCTCATCAGCGTTTTCAAGCAATACGGTGAAATTGAAGATTGCAAAGCCGTATGTGATAAGGTGTCAGGGAAATCCAAGGGCTATGGTTTCATCCTCTTCAAGTCGCGTCGTGGAGCTCGTAATGCGCTGAAGCAACCCCAGAAGAAGATTGGGAACCGGATGGCGGCCTGCCAGCTGGCTTCAATTGGTCCCGTTCAACAACCAACAGCCGCACAACCAACTCCAGCACCACTCGTATCTGAGTACACTCAAAGGAAGATTTACGTTAGCAATGTTGGGGCCGATTTGGATCCTCAGAAGTTGCGTATGTTTTTTTCGAAGTTTGGGGAGATAGAGGAAGGACCATTGGGGCTTGATAAGCTGACTGGGAAACCAAAAGGGTTCTGCTTGTTCGTGTACAAGAGCACCGAGGGTGCCAGAAGGGCGTTGGAAGAGCCACACAAGGATTTTGATGGCCACATTTTGCACTGTCAGAAGGCAATAGATGGTCCAAAGCCAGGAAAGCCTCAATATCAGCTACATCTGAATCCTCAGAGAACTCAATTCCGGAGAAATAAGGACTCTCCATTTGGTGGGGCTGCCAGTGGACCGGGGCACCTGATGGCGCCAGCTGGTCCTGGAATTGCATTTAACCAGGGGGCAGCGGCTGCACAGACACTGAACCCGGATCTTGGGCAGGCATTGACAGCACTGCTTGCAACTCAAGGGAATGCAGGGTGGATATAG 1236 0.5057 MGRKRKLTPKSAESVEPPLKQCYQQQLEQFEPEVEQIVEDQENGAEFEKVEEVEEEEEVEDEEVEEEEEEEEEEEQQEPAQNTNDLAAKAQSTSTAATSGTVQYEKDDDDEEPMYKLLEPFSKEQIVNLLCEAANKHRDVADRIRQVADEDPVHRKIFVHGLGWDTNAETLISVFKQYGEIEDCKAVCDKVSGKSKGYGFILFKSRRGARNALKQPQKKIGNRMAACQLASIGPVQQPTAAQPTPAPLVSEYTQRKIYVSNVGADLDPQKLRMFFSKFGEIEEGPLGLDKLTGKPKGFCLFVYKSTEGARRALEEPHKDFDGHILHCQKAIDGPKPGKPQYQLHLNPQRTQFRRNKDSPFGGAASGPGHLMAPAGPGIAFNQGAAAAQTLNPDLGQALTALLATQGNAGWI 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2936 411 MobiDBLite consensus disorder prediction 38 109 - -
Bisa07g2936 411 FunFam UBP1-associated protein 2A 148 232 - -
Bisa07g2936 411 SUPERFAMILY RNA-binding domain, RBD 146 237 IPR035979 GO:0003676
Bisa07g2936 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Bisa07g2936 411 MobiDBLite consensus disorder prediction 1 20 - -
Bisa07g2936 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 331 IPR000504 GO:0003723
Bisa07g2936 411 SMART rrm1_1 156 228 IPR000504 GO:0003723
Bisa07g2936 411 SMART rrm1_1 256 328 IPR000504 GO:0003723
Bisa07g2936 411 MobiDBLite consensus disorder prediction 38 79 - -
Bisa07g2936 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 257 325 IPR000504 GO:0003723
Bisa07g2936 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 223 IPR000504 GO:0003723
Bisa07g2936 411 Gene3D - 38 236 IPR012677 -
Bisa07g2936 411 Gene3D - 237 366 IPR012677 -
Bisa07g2936 411 Coils Coil 47 77 - -
Bisa07g2936 411 MobiDBLite consensus disorder prediction 80 102 - -
Bisa07g2936 411 SUPERFAMILY RNA-binding domain, RBD 240 355 IPR035979 GO:0003676
Bisa07g2936 411 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 42 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2936 Bisa-ChrBisa07 62602871 62604189 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2936 254 371 C2H2 Transcription Factor Family AT2G19380 34.167 8.55e-13 68.2