LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g2919	ATGAGTGAGTGTGAAAATGAAGTGGTTGCTTTCCTTTTGTTTTTAAGCCACACAGTATATAAGTACTCACATGTAGTCCCACTATTTGAATCCAAAGACACAGAGAAGGGTTACAGAATACTGAGTTCATCAGCCATGGGGAGGCCTCCTTGCTGTGATAAAGCTGGGATCAAGAAAGGTCCATGGACTCCTGAGGAAGATATCATCCTTGTTTCTTACATCCAAGAACATGGCCCTGGAAATTGGAGATCAGTGCCCACTAATACTGGGTTGGCAAGGTGCAGCAAAAGTTGCAGGCTGAGATGGACTAACTACCTGAGGCCAGGAATCAAGAGAGGGAACTTCACTCCTCATGAGGAAGGAATGATAATTCATTTGCAGGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCGTACCTTCCACAGAGAACAGACAATGATATAAAGAATTACTGGAACACACATCTAAAGAAGAAGCTGAAGAAATTTCAAGCAGCCTTGGAGCCTCACCACCTTGTGTCATCACCATCAGAGTCAACAATCTCTTCTCAGTTCATGTCCAAGAGCTTCCATGAGAGAACAAGTTTAAACATGAATGGCAATCATACATCATCTCTTAGGCTTTCTCAGTCGTCGTCATCCTCCACCTATGCCTCAAGCACTGAGAACATCTCACGCCTTTTACAAGGTTGGATGGCAGCTTCCCCAAAACCAGACACTAGTCTTCTTACAGGAACTAACAAAGACACAGAGCTTCCAAACAACGACGACAACAACATTAGCAACTTGGAGAACAATAAGGGGGTGGTGAAGTCTGCATCATGTGGAGATATGGTGTCCCATGAAGAGTTTGATTCTATGTTGTCGTTTGAGAATCTCAACAGTGCTGCTTGGGACAGGTCCACTGGTGATTCTATGGCTGAACAGAGTTCCGAAGTTTCTGCTGATCAGAAGGTGTTTCAGGATGTAGCAGAGAGGAATAAGCCCAGATCTGATCACAACAATAGTGCTCCTCCATTGTCATTTCTTGAGAAGTGGCTGTTTGAGGAAAATGTGGGTCATGATGAGATGATGGAATTATCCCCTATGTTCTAA	1098	0.4408	MSECENEVVAFLLFLSHTVYKYSHVVPLFESKDTEKGYRILSSSAMGRPPCCDKAGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLARCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALEPHHLVSSPSESTISSQFMSKSFHERTSLNMNGNHTSSLRLSQSSSSSTYASSTENISRLLQGWMAASPKPDTSLLTGTNKDTELPNNDDNNISNLENNKGVVKSASCGDMVSHEEFDSMLSFENLNSAAWDRSTGDSMAEQSSEVSADQKVFQDVAERNKPRSDHNNSAPPLSFLEKWLFEENVGHDEMMELSPMF	365

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g2919	365	CDD	SANT	114	157	IPR001005	-
	Bisa07g2919	365	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	54	110	IPR017930	-
	Bisa07g2919	365	FunFam	Transcription factor MYB60	113	185	-	-
	Bisa07g2919	365	MobiDBLite	consensus disorder prediction	197	216	-	-
	Bisa07g2919	365	SUPERFAMILY	Homeodomain-like	56	153	IPR009057	-
	Bisa07g2919	365	Gene3D	-	58	111	-	-
	Bisa07g2919	365	MobiDBLite	consensus disorder prediction	240	266	-	-
	Bisa07g2919	365	FunFam	MYB-related transcription factor	58	111	-	-
	Bisa07g2919	365	ProSiteProfiles	Myb-like domain profile.	54	106	IPR001005	-
	Bisa07g2919	365	ProSiteProfiles	Myb-like domain profile.	107	157	IPR001005	-
	Bisa07g2919	365	MobiDBLite	consensus disorder prediction	237	266	-	-
	Bisa07g2919	365	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	46	275	-	-
	Bisa07g2919	365	SMART	sant	111	159	IPR001005	-
	Bisa07g2919	365	SMART	sant	58	108	IPR001005	-
	Bisa07g2919	365	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	111	161	IPR017930	-
	Bisa07g2919	365	CDD	SANT	61	106	IPR001005	-
	Bisa07g2919	365	Pfam	Myb-like DNA-binding domain	59	106	IPR001005	-
	Bisa07g2919	365	Pfam	Myb-like DNA-binding domain	112	157	IPR001005	-
	Bisa07g2919	365	Gene3D	-	113	176	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g2919	Bisa-ChrBisa07	62353624	62354987	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g2919	46	199	MYB Transcription Factor Family	AT5G62470	74.214	1.26e-80	248

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa07g2919		Myb_DNA-binding	1e-14	CL0123