LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g2863	ATGGAAATCCAGCAGCCAAAGAAGCATCAGAAAGCAGTGGTTCCAAGTAGCAAAGGAGGCAGATTCAAAGGAAGAAAATTTGTTGGGGTGAGACAAAGGCCTTCTGGGAGATGGGTGGCTGAGATCAAACACACATCCCAGAACATAAGACTCTGGCTTGGCACATTTGAGACTGCAGAGGAAGCTGCCAGAGCTTATGATGAAGCCGCCTGCCTTCTTCGCGGATCCAACACTCCCACCAACTTCATCACTCGCGTCTCCTTGGATTCCCCTCTTGCTTCTCGGATTCGAAATCTGCTTAATAACAGAAAAGGAATCAGAAAACAAGAAGATGTTATTGCCTCTTCCTCAAGGATCAGCACCACTAGGAATACTTGTAACTCAAGTAATGGTGACAAGAATGATAGCTCTCTTGCTGGTGGGAAAATTCAGAACACTGATTTATTTGGTGATGGATATAGACCAGATTTGAGCAATTGTAAGGAGGGGTTTGAGTTGGGTCCTCAATCCAATGTTTCATGTGGTTTTGGACCTTTCATTGATCGTTTTCCATTGGATAAAGTATTGGACATGCCAAAGTCTGATGGTCTTGCTGATACAGTTGAGTTGGAGCTTTCAGAATTTCAAAGGCTGAAAGTTGAAAGGCAAACATCAGCTTCACTCTATGCAGTTAATGGAATGCATGAGTACAAGGAAACTGTCGAGGACTCTACTGAAGAAGCTCTCTGGGATCTTCCACCCCTATGGGCCACGTTCTGTTAA	762	0.4436	MEIQQPKKHQKAVVPSSKGGRFKGRKFVGVRQRPSGRWVAEIKHTSQNIRLWLGTFETAEEAARAYDEAACLLRGSNTPTNFITRVSLDSPLASRIRNLLNNRKGIRKQEDVIASSSRISTTRNTCNSSNGDKNDSSLAGGKIQNTDLFGDGYRPDLSNCKEGFELGPQSNVSCGFGPFIDRFPLDKVLDMPKSDGLADTVELELSEFQRLKVERQTSASLYAVNGMHEYKETVEDSTEEALWDLPPLWATFC	253

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g2863	253	SMART	rav1_2	26	89	IPR001471	GO:0003700\|GO:0006355
	Bisa07g2863	253	PRINTS	Ethylene responsive element binding protein signature	27	38	IPR001471	GO:0003700\|GO:0006355
	Bisa07g2863	253	PRINTS	Ethylene responsive element binding protein signature	49	65	IPR001471	GO:0003700\|GO:0006355
	Bisa07g2863	253	MobiDBLite	consensus disorder prediction	1	20	-	-
	Bisa07g2863	253	FunFam	ethylene-responsive transcription factor RAP2-11	25	84	-	-
	Bisa07g2863	253	MobiDBLite	consensus disorder prediction	117	140	-	-
	Bisa07g2863	253	ProSiteProfiles	AP2/ERF domain profile.	26	83	IPR001471	GO:0003700\|GO:0006355
	Bisa07g2863	253	SUPERFAMILY	DNA-binding domain	26	83	IPR016177	GO:0003677
	Bisa07g2863	253	Gene3D	AP2/ERF domain	25	85	IPR036955	GO:0003700\|GO:0006355
	Bisa07g2863	253	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	21	121	-	-
	Bisa07g2863	253	Pfam	AP2 domain	26	75	IPR001471	GO:0003700\|GO:0006355
	Bisa07g2863	253	CDD	AP2	26	82	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g2863	Bisa-ChrBisa07	61452575	61453336	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g2863	17	253	AP2-EREBP Transcription Factor Family	AT5G19790	40.800	3.77e-41	140

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa07g2863		AP2	6.1e-14	CL0081