LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g2783	ATGATGAACCCATTTTCTTCGTCGTCGTCGTCGTCGTCGTCGTCGTCCAAGGCAAAAAAGAAGCAAACGGCGACAACAAGCACAGGGACAGCAACGACACAAGAGCAAAAACATGAAACGGCATGGGGAGGGAGGTACCTGGGTGTTCGGAGGAGGCCATGGGGACGATACGCCGCGGAGATTCGAGACCCTTCCACCAAAGAGAGGCATTGGCTTGGCACCTTCGACACTGCTGAAGAAGCCGCCTTAGCATACGACAGAGCGGCTCGGTCCATGCGCGGCTCACGTGCCCGAACCAACTTCGTCTACTCCGACACCCCACCGGGCTCTTCCGTCACCTCCATTATCTCCCCCGATGAACAAACCCACCAGAACCATGACTTCTCGTCTTTCTTCGACCCGAATTCGATCACCCAACAAACCGACCCGACCCTGCAGCTGTCTGGATGTAACGCCTTCCTTGGGATCACGGATAGCAATAATAACAATCATTATAACAATACCTGGGCAGCGCCTTCTTCTGGGGTTTATGCGCAACATCAAGTTCCCAATATGGAGGCTAATTATAATAACCTAAGCCATTTCCAACAACTGTATGATGATAGTAACACTGAGCTTCCTCCATTGCCCCCGGATATCACCAGCTCCGCCGGATGTGAAATGGGGCATGAGTTTTACAGTAACGAGTTCGGGTTTTCGGAGCAGAGCACCGTGGCAGCAACAAGCGGAGCATTCAACTCGTACTTGGGTTTCGATTCGGTTGATTACATGCATAGCCCGATGTTCAGCACAATGCCGCCGGCGTCAGATAAGGTGCCGGAGGGTTTCGACTTGGGCGGTTCGTCTTATTTCTTCTGA	858	0.5256	MMNPFSSSSSSSSSSSKAKKKQTATTSTGTATTQEQKHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYSDTPPGSSVTSIISPDEQTHQNHDFSSFFDPNSITQQTDPTLQLSGCNAFLGITDSNNNNHYNNTWAAPSSGVYAQHQVPNMEANYNNLSHFQQLYDDSNTELPPLPPDITSSAGCEMGHEFYSNEFGFSEQSTVAATSGAFNSYLGFDSVDYMHSPMFSTMPPASDKVPEGFDLGGSSYFF	285

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g2783	285	ProSiteProfiles	AP2/ERF domain profile.	45	102	IPR001471	GO:0003700\|GO:0006355
	Bisa07g2783	285	Gene3D	AP2/ERF domain	44	103	IPR036955	GO:0003700\|GO:0006355
	Bisa07g2783	285	PRINTS	Ethylene responsive element binding protein signature	68	84	IPR001471	GO:0003700\|GO:0006355
	Bisa07g2783	285	PRINTS	Ethylene responsive element binding protein signature	46	57	IPR001471	GO:0003700\|GO:0006355
	Bisa07g2783	285	SUPERFAMILY	DNA-binding domain	45	103	IPR016177	GO:0003677
	Bisa07g2783	285	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	19	174	-	-
	Bisa07g2783	285	CDD	AP2	45	101	IPR001471	GO:0003700\|GO:0006355
	Bisa07g2783	285	SMART	rav1_2	45	108	IPR001471	GO:0003700\|GO:0006355
	Bisa07g2783	285	MobiDBLite	consensus disorder prediction	1	39	-	-
	Bisa07g2783	285	Pfam	AP2 domain	46	94	IPR001471	GO:0003700\|GO:0006355
	Bisa07g2783	285	MobiDBLite	consensus disorder prediction	1	44	-	-
	Bisa07g2783	285	FunFam	Ethylene-responsive transcription factor 2	45	103	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g2783	Bisa-ChrBisa07	60437050	60437907	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g2783	30	281	AP2-EREBP Transcription Factor Family	AT5G13910	42.105	6.55e-55	175

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa07g2783		AP2	1.9e-13	CL0081