Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2647 ATGGGAATGGCTGCTCTTTCGGTTCTCTTTCTTCTTCTTGCTCTCCCTCTCTTCGTCTACTCCTACTCACCAGTCCAAGACCCCGAGCTAGTTGTGCAAGACGTACACAGGAGCATTAATGCCTCCAGAAGAAACTTGGGGTATTTATCATGTGGAACCGGGAATCCCATTGACGACTGCTGGCGGTGTGACCCGAACTGGGAGCAGAACCGGCAGAGGCTAGCTGACTGCGCCATTGGGTTCGGGAAGGGCGCCATTGGTGGGAGAAACGGTCGAATCTATGTGGTCACCGACTCAGGGGACGACGATCCGGTGAACCCCAAGCCAGGCACTCTAAGACACGCCGTCATTCAGGATGAGCCATTATGGATCATCTTCAAGAGAGACATGGTCATCACTCTCAAGCAAGAGCTGGTCATGAACTCCTTCAAGACCATCGACGGAAGGGGTGCGAGCGTGCACATTGCCGGTGGGGGATGTATCACTGTTCATTATGTGAGTAACATTATCATTCATGGCATTCATATACACGATTGTAAGCCTACCGGGCATGCCGATATTAGAGACTCTCCTCACCACTACGGGTGGTGGACGGTGTCCGACGGCGATGGCATCTCCATCTTTAACTCGAGGCATGTGTGGGTTGACCATTGCTCACTGTCAAATTGCCATGATGGCCTCATTGATGCCATCCATGGCTCCACCGCTATCACCATCTCCAACAACTACATGACCCACCATGATAAGGTCATGCTCTTGGGCCACAGCGACTCTTATAATCAGGACAAGAACATGCAGGCCACCATTGCCTTCAACCACTTCGGAGAAGGCCTTGTTCAAAGAATGCCAAGGTGTAGGCATGGGTATTTTCACGTGGTGAACAATGACTATACGCACTGGGAAATGTACGCGATTGGTGGGAGTGCAGAGCCTACTATAAACAGCGAAGGGAACAGGTTTCTTGCGCCGGATAATAGGAACAGCAAGGAGGTGACGAAGCACGAGGACGCTCCTGAGGACGAATGGATGAACTGGAACTGGAGGTCGGAGGGTGACCTCTTCTTGAATGGAGCATATTTCAGGCAATCTGGTGCAGGTGCTTCTTCCAGCTATGCCAGGGCTTCTAGTCTCAGCGCTAGACCCTCATCTCTGGTTGGCTCCATGACCATCACTGCTGGAGTACTCACCTGCAGGAAGAGCGTCCGTTGCTGA 1212 0.5215 MGMAALSVLFLLLALPLFVYSYSPVQDPELVVQDVHRSINASRRNLGYLSCGTGNPIDDCWRCDPNWEQNRQRLADCAIGFGKGAIGGRNGRIYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVITLKQELVMNSFKTIDGRGASVHIAGGGCITVHYVSNIIIHGIHIHDCKPTGHADIRDSPHHYGWWTVSDGDGISIFNSRHVWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYNQDKNMQATIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSEGNRFLAPDNRNSKEVTKHEDAPEDEWMNWNWRSEGDLFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTITAGVLTCRKSVRC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2647 403 PANTHER PECTATE LYASE 18-RELATED 27 399 IPR045032 GO:0030570
Bisa07g2647 403 SUPERFAMILY Pectin lyase-like 55 394 IPR011050 -
Bisa07g2647 403 Pfam Pectate lyase 135 320 IPR002022 -
Bisa07g2647 403 FunFam Pectate lyase 54 396 - -
Bisa07g2647 403 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Bisa07g2647 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Bisa07g2647 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Bisa07g2647 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Bisa07g2647 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Bisa07g2647 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Bisa07g2647 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Bisa07g2647 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Bisa07g2647 403 SMART amb_all 129 326 IPR002022 -
Bisa07g2647 403 Gene3D - 54 396 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2647 Bisa-ChrBisa07 58417064 58418459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2647 5 403 Polysaccharide Lyase AT5G63180 75.682 0.0 630