LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g2619	ATGAGGGTGCACGCTGAGAACTTCTTGATGTCGATACCTGTCTATGGAGTTGAGTCTTTATCAGAGGTTCAGAATTCAGTTTCTGCGGCAGATCACGATTATCCTTTAACATGGGCTTCACGGCCCTCCTGGCCTCCTCTAAGAGCTTCTAGAGATGATAGGGTTTCTTCCACATCCTATTTGACTGGTCATGATGACTATGGAACGAAGACCTTCCGCCATCACAAGAGCTGTGTAATTAATCAAAAGCATTCTTATCGGGAGGCCAACAATGTGCTGCGCGGGGAGTTACCAAGTATGTCAAAGCGGTACCACAACTGTGGAGGATATGTGAGCTTCATCGAAACTGGAGGAAGTTGTTTAGGGAAGAATATCTGTGCTATGGAACCATTTGGTGGTTCCAAGTATTGTGATTCAAATGGCACATTAGAATCTGAAAATTTCCTCCTGGGCCCAAGAGGAGTTGAACAAACAAAGAGTTACTGTCAGTCAGAGGTTAGTTTCTGTCCAAGTCCTCAGAGTAGTAGTTTCTATTCTGCCACTGTCTATTCAGAAGCCAAACAAAGTTTTACTAATACCGAAGTCAGTGAATGTGTTAGTGTTGATAAGTCAGGTGAAATTGGTGAAGTTATTAATTCCTATTATTTTAACGAGAGCAGGAAGACCAGTGATGTTAGTGATGAGAGCAGCTCCAGTACTTTAAGCAGTTCCTTTTGTAAACCCCGTATGGCAAATGATGTAAGATGGGAAGCAATTCAAGTAGTCCGAACTCATGAGGGGGTGTTGGAAATGAGACATTTCAGGTTGTTGAAGACATTGGGATGTGGAGACATAGGAAGTGTTTATCTAGCAGAGTTAACTGGCACTAGGGCTTGTTTTGCCATGAAAATTATGAATAAAAAAGATCTGGCAAGTCGAAAGAAGCTTCTAAGGGCTCAGATAGAAAGAGACATATTGCGGTCCCTGGACCATCCATTTCTGCCCACATTATATGCGCACTTTGAGACACAGACATTCTCTTGCTTGGTAATGGAGTTCTGCCCTGGTGGGGATCTGCATGCAGCCAGACAAAGACAACCTGGGAAATATTTTTCAGAGAATGCTGCCAGGTTTTATGCGGCGGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGTATCATCTACAGAGACCTTAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCATATAATGCTGTCAGATTTTGACCTCTCCCTGAGGAGCACTGTGAGCCCAACTCTGGTTAAAGCATCAAACTACAGCATGGAGACAAAAAGCTCAGACTACTGCAGTGAACCAACTTGTGGTGTGATGCAGCCAGATTGCATCCAGCCTGCTTGCTTTACACCGCGTTCACGGTCTGGAAGATCCAAGAGAGAAAAGAAGCTGAAAACAAGGAATGAAATGCATCATGAGGTGAGCATTCTTCCCGAGCTCATCGTAGAGCCCACAAATGCCCGGTCAATGTCGTTTGTGGGCACACACGAGTACTTGGCCCCAGAGATCATTAGAGGCGAAGGGCACGGGAGTGCGGTGGACTGGTGGACTTTTGGGATATTCCTGTATGAGCTTTTGTTTGGGAGAACGCCTTTCAAAGGTCCGGCGAACCGAGCCACTCTGTTCAACGTGGTTGGGCAGCCCTTGAGATTCCCGGAATCCCCTGGCGTCAGCTTTGCTGCCAGAGACCTCATAAGGGGTTTGCTGGTGAAGGAGCCTCAGCATCGTCTTGCCTATAGACGTGGAGCCACAGAACTCAAACGACATCCTTTCTTTCAGAACGTTAACTGGGCACTCATCCGTTGCACGCATCCTCCAGAGGTGCCTGTAGCTTCATCTGCACACCCCGTCACCATGAAAGCACCCACACCTGAAAACCTGCCTCTCAAGCCTTCTGCTACTTATTTAGACGTTGATCTCTTTTGA	1950	0.4631	MRVHAENFLMSIPVYGVESLSEVQNSVSAADHDYPLTWASRPSWPPLRASRDDRVSSTSYLTGHDDYGTKTFRHHKSCVINQKHSYREANNVLRGELPSMSKRYHNCGGYVSFIETGGSCLGKNICAMEPFGGSKYCDSNGTLESENFLLGPRGVEQTKSYCQSEVSFCPSPQSSSFYSATVYSEAKQSFTNTEVSECVSVDKSGEIGEVINSYYFNESRKTSDVSDESSSSTLSSSFCKPRMANDVRWEAIQVVRTHEGVLEMRHFRLLKTLGCGDIGSVYLAELTGTRACFAMKIMNKKDLASRKKLLRAQIERDILRSLDHPFLPTLYAHFETQTFSCLVMEFCPGGDLHAARQRQPGKYFSENAARFYAAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRSTVSPTLVKASNYSMETKSSDYCSEPTCGVMQPDCIQPACFTPRSRSGRSKREKKLKTRNEMHHEVSILPELIVEPTNARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLFGRTPFKGPANRATLFNVVGQPLRFPESPGVSFAARDLIRGLLVKEPQHRLAYRRGATELKRHPFFQNVNWALIRCTHPPEVPVASSAHPVTMKAPTPENLPLKPSATYLDVDLF	649

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g2619	649	Pfam	Protein kinase domain	497	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa07g2619	649	Pfam	Protein kinase domain	268	422	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa07g2619	649	SUPERFAMILY	Protein kinase-like (PK-like)	243	634	IPR011009	-
	Bisa07g2619	649	PANTHER	FLIPPASE KINASE 1-RELATED	173	619	-	-
	Bisa07g2619	649	FunFam	Serine/threonine-protein kinase D6PK-like	265	350	-	-
	Bisa07g2619	649	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	388	400	IPR008271	GO:0004672\|GO:0006468
	Bisa07g2619	649	Gene3D	Transferase(Phosphotransferase) domain 1	351	426	-	-
	Bisa07g2619	649	SMART	serkin_6	267	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa07g2619	649	ProSiteProfiles	Protein kinase domain profile.	267	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa07g2619	649	FunFam	serine/threonine-protein kinase D6PK-like	351	418	-	-
	Bisa07g2619	649	Gene3D	Phosphorylase Kinase; domain 1	265	350	-	-
	Bisa07g2619	649	CDD	STKc_phototropin_like	265	617	-	-
	Bisa07g2619	649	Gene3D	Transferase(Phosphotransferase) domain 1	495	618	-	-
	Bisa07g2619	649	FunFam	serine/threonine-protein kinase D6PK-like	495	618	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g2619	Bisa-ChrBisa07	58047403	58050252	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g2619	163	649	AGC Kinase Gene Family	AT3G27580	62.868	0.0	618

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Bisa07g2619		Pkinase	2e-36	CL0016