LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g2612	ATGGAGAAAAAGGTGAGCGATTCGTGTGAGGATCCAGAAGTGAGAAAGGGGCCGTGGACCATGGAAGAAGACTTGATCTTGATCAACTATATCGCTAATCATGGTGAAGGTGTCTGGAACTCCTTGGCCAAAGCTGCAGGCCTTAAACGTACCGGAAAAAGTTGCCGACTCCGGTGGTTAAACTACCTTCGTCCCGATGTTAGAAGAGGAAATGTTACGCCAGAGGAGCAGCTTTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGATGGTCGAAAATTGCAAAGCATCTCCCGGGAAGAACTGATAATGAGATAAAGAACTACTGGAGGACTCGGATCCAGAAGCACATTAAGCAATCTGAGAACTTGCAGCCACAGAGCTCATCAGATCAAGCAAGCTCAAGCAAAGTGTCTACCATGGAAGACCCAATGGAGGTCTCCTTGTACTCTTCACCCTCATACTCATACCGAGCCACTTTTGAGCCTTTTCCAGCTCCAATATTCCCACCTATCCCTGAATATTCCAGTAGCTGCAGTGACGACAATTATTGGAGCATGGAAGATCTCTGGTCTTTGCACTTGCTTAATTAA	594	0.463	MEKKVSDSCEDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNVTPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQSENLQPQSSSDQASSSKVSTMEDPMEVSLYSSPSYSYRATFEPFPAPIFPPIPEYSSSCSDDNYWSMEDLWSLHLLN	197

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g2612	197	ProSiteProfiles	Myb-like domain profile.	11	63	IPR001005	-
	Bisa07g2612	197	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	64	118	IPR017930	-
	Bisa07g2612	197	SMART	sant	68	116	IPR001005	-
	Bisa07g2612	197	SMART	sant	15	65	IPR001005	-
	Bisa07g2612	197	FunFam	Myb-related protein 305	73	143	-	-
	Bisa07g2612	197	Gene3D	-	16	68	-	-
	Bisa07g2612	197	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	12	132	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Bisa07g2612	197	ProSiteProfiles	Myb-like domain profile.	64	114	IPR001005	-
	Bisa07g2612	197	CDD	SANT	73	112	IPR001005	-
	Bisa07g2612	197	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	11	63	IPR017930	-
	Bisa07g2612	197	Gene3D	-	73	143	-	-
	Bisa07g2612	197	SUPERFAMILY	Homeodomain-like	13	110	IPR009057	-
	Bisa07g2612	197	CDD	SANT	18	63	IPR001005	-
	Bisa07g2612	197	Pfam	Myb-like DNA-binding domain	16	63	IPR001005	-
	Bisa07g2612	197	Pfam	Myb-like DNA-binding domain	71	112	IPR001005	-
	Bisa07g2612	197	FunFam	Myb transcription factor	16	68	-	-
	Bisa07g2612	197	MobiDBLite	consensus disorder prediction	120	144	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g2612	Bisa-ChrBisa07	57907788	57912617	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g2612	10	197	MYB Transcription Factor Family	AT3G01530	59.896	8.71e-79	232

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa07g2612		Myb_DNA-binding	6.3e-15	CL0123