Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2553 ATGAAGCGAACAAGGGATGATGCTTATGCTTCCTCTCAATTAAAGCGACCCTTGGCTTCTTCACGTGGGGATTCCTATGGCCAATCCCAAGTCCCTGTAGGAGGAGGAGGAGGAGGGGGAGGTACTTCACAGAAATTGACAACCAATGATGCTTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCATGACCAGAGAGAAAAATATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAACTATTCAAAGGGCATAATAACTTGATTTTTGGATTCAACACTTTCTTGCCAAAGGGATATGAGATAACACTTGATGAGGATGAGGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTATATAAATCATTCTTGGACATTTTGAATATGTACCGCAAAGAGCACAAGGATATTGGCGAGGTCTATAAAGAGGTTGCTTCCCTTTTTGAGGACCATCCAGATTTGCTTGAGGAGTTTACAAGATTTTTACCAGATACTTCTGCAACCCCTTCTACACAGAATGCTGTATTTGGTCGAAATTCATTCCAGCGATTCAATGAACGTAGTTCTACAGCACCCATGATGCGGCAAATGCAACAACGCTATCGACGGGATAGGCTTATTGGTTCTCATGATCGTGATCTAAGTGTTGATCGTCCTGAGCTAGATGATGACAAGGCAATAATGAAAGCACACAAGGAGCAGAGGAAGCGTGTCGATAAGGAGAGTAGGGATAAGAAAACTCGTGATCAGGATGAGAGAGAACGTGATCATGACAATAACAGGGATTTAAACTTGCTTATTCCTGACAGAAAGAAATCTGTCAAGAAGGGTGAAGCTTTTGGTTTGACTGCTGAATTCACTTCTTATGATGACAAAGATGCCTTAAAGAGCATGTATAACCAAGCATTCAGTTTCTGTGAGAAAGTTAAAGAAAAGTTGAGCAGTTCAGATGACTACCAGACATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGTACCCTGACCTTATGGATGAATTCAATGAGTTCTTGGAGCGTTATGGGTTCCTTGCCGGTGTCATAAGTAAAAAGTCGTTGTGTGGTGATGGTCAATTATCCAGAACATTAAAGTTGGAGGACAAAGATAGAGACCAGAAGCGTGAGATGGATGGACCTAAAGAAAAGGAAAGATACAAAGAGAAATACTTTGGAAAATCCATTCAAGAACTTGACCTCAGTAATTGTCAACTTTGTACTCCGAGCTACCGGCATTTGCCTGATGATTATCCAATTCCTGTGGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCCTTCAAACATATGCGCAGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGATATGTTGTTAGAGTCTGTGAGCTCAGCTGCCAAATGTGCAGAGGAGTTGTATAATAGCATTAATGAAAATAAGATCAATATGGAGGCTCCAATCTGTATTGAAGATCACTTTAGTGCTCTTAATTTAAGGTGCATTGAACGTCTATATGGAGACCATGGTCTTGATGTTATGGACATATTACGTAAGAATCCAACTCATGCTCTTCCTGTGATATTGACTCGCCTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGTTCCGATTTCAATAAGGTTTGGGCTGAAATTTATGCTAAAAACCACTACAAATCACTTGATCACCGTAGCTTCTATTTCAAGCAACAAGATTCGAAGAACTTGAGCACAAAATCTTTGGTGGCTGAAATTAAAGAAAATAAAGCAAAGCAGCATAAAGAGTATGATATTCTTCAGGGTATTGCTGCTGGAAACAAACAGCCTCGAATTCCACATCTAGAATTTGAATACTCTGATGTTGGGATTCATGAAGACCTTTATAAACTTATTCGTTATTCATGTGAAGAGGTCTTCTCAAGTAAAGAGCTGTCAAATAAAATTATGAGACTTTGGACTACCTTTCTAGAGGCAATGCTTGGTGTTCCTTCTCGTTCTCATGGAACAGAAAATGTAGAGGACAGGAAAACTGGGCATCGTGTTGCCCATTTTGTTGCATCAAATATAGGAGGAGGTGATGGAAACCCTCATGGAGACTCTATTCTAATGAATTCTAGGTTACCAAAATCTGATACTAATGAAGCTGAGGGTAGAGTAACTGAGGTAAAGAATGTTCAGCAGACTAGTTCAGCAGCCAATGATAAAGAAAATGGATCTGTTGACTGTGATTGTGTCTGTGGAGATGATCCTCTAGTGGATAAAGGGAAGAACAATGTAGATTGTAGTGAAAAAGTCTCTGGGTTTAGTAAACAAATTGCCTCTGATGAACAATCAGCTATCAACAATGCATCAATTGTGGTTAGGGGAGAGACTAGCCTGAGCAAGACCAGCCTAGAAATTACTTCAGGCTGTGTACTCAATCCAGCAAGACCAACTGCAACACTAGGTGATGATGATTCTGTAACCAAGTCCCAGTGTGGTAATGTGCCTTTGATGGAGGGACGAGACATTGGACCTCCACTTCCATTTGCCAATGGAGTGCTAATTGAAATCAATAAAGTCAAAAGCCATGAAGAATCTGCTGGACCTTGCAAAGTAGAAAAGGAGGAGGGTGAATTGTCGCCCAATGTCGATTTTGAGGAGGATAATTTTGTTGGCTATGGAGACTCCAGCGGGCAGGCAATGCCTAAATCAAAGCACAATATTGAAAGGAGGACTTATCAATCCAGAAATGGGGAGGAAGAATGCTGTCCAGAGGCTGGAGGTGATAATGGTGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGGTGGCGAAGATGTCTCTGGTAGTGAGTCTGCTGGTGATGCATGCTCTCGAGAAGAGCATGAGGAGGAGGAAGATATAGAACATGATGATGTTGAAGGTAAGGGTGAGAGTGAAGGTGAAGCTGATGGGATATGTGATGCGCAGTCTACCGGAGGAGAAGGCTCATCATTGCCATTGTCCGAAAGATTCCTTTTGTCTGTAAAGCCTCTTACAAAGCGTGTTTCAGCAGTTTCACTTGCTGAGGAAAGAAACAATTCCAGGGTCTTCTATGGAAATGATGATTTTTTTGTTCTTTTTAGGCTTCATCAAATTCTTTATGAGAGGATCTTATCAGCAAAAAGATATTCAATGAATTCTGAAATGAAAAGGAAAACCACAAAAGAGGCTTGCTCTTCAGATCCTTATTCGAGATTTATGAATGCACTTTACAACTTGCTTGATGGATCTGCTGACAATGCTAAGTTTGAAGATGAATGCCGAGCAATAATTGGAAACCAGTCATATGTTTTATTCACATTGGACAAGTTAATATATAAATTGGTCAGACAGCTTCAAACGGTTGCAGCTGATGAGATAGACAACAAGCTTCTCCAACTGTATGAGTACGAAAAGTCACGGAAACCTGGGAAATTTATTGATTCAGTATACCATGCAAATGCACGTGTCATCCTTCATGACGAGAATATATATCGGTTGGAATGTTCCTCTACCCCCTCCCGACTTTTCATCCAGCTGATGGACAATATGAATGAAAAGCCTGAGGTCTTTGCTGTTTCTATTGATCCAAATTTTTCCTTTTATTTGTACAATGATTTTCTGTCAGTCTCTTCTGGCAAAAAGGAACCCCATGGCATTATACTGCAAAGAAACAAGCGCAAATATGGAGGTTTAGATGAGCTTGCAGCAACGTGCTTGGCCATGGAAGGAGTTAACGTAATTAATGGATTGGAATGTAAGATAGCTTGCAACTCATCCAAGATCTCCTATGTTTTGGATACCGAAGACTTTTTCTTCCGTCCCAAAAGGCAAAGAAAAACATCATCACGGACAGCATCTTCCCAGCGACGTGGGGTTAGAGAGGAAAGATTTCGCAGATTCTTATCAGTTTCATGA 4140 0.4051 MKRTRDDAYASSQLKRPLASSRGDSYGQSQVPVGGGGGGGGTSQKLTTNDALSYLKEVKDMFHDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYKEVASLFEDHPDLLEEFTRFLPDTSATPSTQNAVFGRNSFQRFNERSSTAPMMRQMQQRYRRDRLIGSHDRDLSVDRPELDDDKAIMKAHKEQRKRVDKESRDKKTRDQDERERDHDNNRDLNLLIPDRKKSVKKGEAFGLTAEFTSYDDKDALKSMYNQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMDEFNEFLERYGFLAGVISKKSLCGDGQLSRTLKLEDKDRDQKREMDGPKEKERYKEKYFGKSIQELDLSNCQLCTPSYRHLPDDYPIPVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKCAEELYNSINENKINMEAPICIEDHFSALNLRCIERLYGDHGLDVMDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKENKAKQHKEYDILQGIAAGNKQPRIPHLEFEYSDVGIHEDLYKLIRYSCEEVFSSKELSNKIMRLWTTFLEAMLGVPSRSHGTENVEDRKTGHRVAHFVASNIGGGDGNPHGDSILMNSRLPKSDTNEAEGRVTEVKNVQQTSSAANDKENGSVDCDCVCGDDPLVDKGKNNVDCSEKVSGFSKQIASDEQSAINNASIVVRGETSLSKTSLEITSGCVLNPARPTATLGDDDSVTKSQCGNVPLMEGRDIGPPLPFANGVLIEINKVKSHEESAGPCKVEKEEGELSPNVDFEEDNFVGYGDSSGQAMPKSKHNIERRTYQSRNGEEECCPEAGGDNGADADDEDSENVSEGGEDVSGSESAGDACSREEHEEEEDIEHDDVEGKGESEGEADGICDAQSTGGEGSSLPLSERFLLSVKPLTKRVSAVSLAEERNNSRVFYGNDDFFVLFRLHQILYERILSAKRYSMNSEMKRKTTKEACSSDPYSRFMNALYNLLDGSADNAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVAADEIDNKLLQLYEYEKSRKPGKFIDSVYHANARVILHDENIYRLECSSTPSRLFIQLMDNMNEKPEVFAVSIDPNFSFYLYNDFLSVSSGKKEPHGIILQRNKRKYGGLDELAATCLAMEGVNVINGLECKIACNSSKISYVLDTEDFFFRPKRQRKTSSRTASSQRRGVREERFRRFLSVS 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2553 1379 SMART hdac_interact2seq4b 457 557 IPR013194 -
Bisa07g2553 1379 FunFam Paired amphipathic helix protein SIN3 325 397 - -
Bisa07g2553 1379 MobiDBLite consensus disorder prediction 929 1065 - -
Bisa07g2553 1379 MobiDBLite consensus disorder prediction 236 298 - -
Bisa07g2553 1379 PANTHER SIN3B-RELATED 44 1241 IPR039774 GO:0003714
Bisa07g2553 1379 FunFam Paired amphipathic helix protein Sin3 50 112 - -
Bisa07g2553 1379 Pfam C-terminal domain of Sin3a protein 1098 1346 IPR031693 -
Bisa07g2553 1379 ProSiteProfiles PAH domain profile. 128 198 IPR003822 GO:0006355
Bisa07g2553 1379 MobiDBLite consensus disorder prediction 14 28 - -
Bisa07g2553 1379 MobiDBLite consensus disorder prediction 969 983 - -
Bisa07g2553 1379 ProSiteProfiles PAH domain profile. 44 114 IPR003822 GO:0006355
Bisa07g2553 1379 ProSiteProfiles PAH domain profile. 328 397 IPR003822 GO:0006355
Bisa07g2553 1379 FunFam Paired amphipathic helix SIN3-like protein 127 198 - -
Bisa07g2553 1379 Gene3D Paired amphipathic helix 50 112 IPR036600 GO:0006355
Bisa07g2553 1379 Gene3D Paired amphipathic helix 325 396 IPR036600 GO:0006355
Bisa07g2553 1379 SUPERFAMILY PAH2 domain 125 197 IPR036600 GO:0006355
Bisa07g2553 1379 SUPERFAMILY PAH2 domain 329 395 IPR036600 GO:0006355
Bisa07g2553 1379 MobiDBLite consensus disorder prediction 1 45 - -
Bisa07g2553 1379 Gene3D Paired amphipathic helix 127 199 IPR036600 GO:0006355
Bisa07g2553 1379 Pfam Sin3 family co-repressor 461 551 IPR013194 -
Bisa07g2553 1379 Pfam Paired amphipathic helix repeat 151 195 IPR003822 GO:0006355
Bisa07g2553 1379 Pfam Paired amphipathic helix repeat 67 111 IPR003822 GO:0006355
Bisa07g2553 1379 Pfam Paired amphipathic helix repeat 350 394 IPR003822 GO:0006355
Bisa07g2553 1379 SUPERFAMILY PAH2 domain 41 113 IPR036600 GO:0006355
Bisa07g2553 1379 MobiDBLite consensus disorder prediction 995 1009 - -
Bisa07g2553 1379 MobiDBLite consensus disorder prediction 929 944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2553 Bisa-ChrBisa07 56826752 56838308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2553 39 147 WRKY Transcription Factor Family AT4G12020 51.818 3.41e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bisa07g2553 Sin3a_C 8.3e-56 No_clan