LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g2519	ATGACGGCAGGAAGTATAGGCCGTGTTAGTGTCACCTTACTGTTCGTGGCTACGTTGGCCGTTACTATTCCATGCCTGGAGGCCAACATTGGCGAGTTTGATGACCACCTGCGGCAGAAAGCAGAGGAAGCTCGCAGAGCAGCTCTAGAAGCCTACCATCCGGACCCTTTTAGTATGACCTCCAACTTCAACTCGGAGGTTCACATGGCGGTGGAGGAGGCGAGGAACGCAACGAGGGGGAGGGGGATGGCTGAGAGAATAGATGAGTGCGAGGCGGTGAACCCAATTGACCGATGCTGGAGGTGCGATAAAGACTGGGCCCAAAATCGGTTTCGGCTAGCCAAGTGTGCCATGGGATTCGGACGGGAAGCCACGGGAGGACTCGGGGGGGAGATCTACGTGGTGACGGATGAGTCAGACGAGGACGTGAAGAACCCGAAGCCCGGAACTCTAAGGTGGGGGGTGATCCAGTCAAAGCCATTGTGGATCACATTCGGGCACAACATGGTAATCAAATTGCAACAGGAGTTGTTGGTGAATTCCGACAAGACCATCGACGGTCGTGGGGCGAACGTTCAGATCAGGGGCGGGGGGGGCCTCACCTTGAGTTACTCGAAGAACGTGATCATCCACAACATTCGCATCCGCAACATCAAATCTAAGGCGGGAGGTGAGATCAGCGACACCCCTGTACATTATGGGTTCAGAACCAGAAGTGACGGTGATGCCATCAGCCTGTTCGGTGCCTCCAAAGTCTGGATAGACCACGTGTCCATGTCCAATGCCGATGACGGGCTGGTGGACCTTATCATGTACTCCACGGCCATCACCATCTCAAACTGCCACATGACCAAACACGACGACGTGATGCTGTTCGGCGCGAATGATCTGCATGTCTGGGACATTCTGATGCAGGTCACGGTGGCGTTCAACCACTTCGGGCAGGGACTGACGGAGAGGATGCCGAGGGCCAGGTACGGGTGGATCCACGTGGTGAACAACCACTACACTCACTGGCAAATGTACGCCATTGGAGGAAGCACCCATCCTACCATAGTGAGCCAAGGGAATAGGTTTATTGCTCCCAGCAATCCGGATGCCAAGGAAGTGACAAAAAGAGAGTACACAGATGAAAGTGTGTGGAGGAATTGGCAGTGGACCTCGGAAAATGACGAAATGGTGAACGGAGCGGTGTTTGTTCCGTCCGGAAAACCCGTCGACCTTGCTACGATGAAGAATATGGTGCCACCCAGACCCGGGTCTGAAGTGAGGGACCTTACGCGAGACGCGGGTGCACTCAATTGCATAGAAGGACGTCCTTGTTAA	1326	0.546	MTAGSIGRVSVTLLFVATLAVTIPCLEANIGEFDDHLRQKAEEARRAALEAYHPDPFSMTSNFNSEVHMAVEEARNATRGRGMAERIDECEAVNPIDRCWRCDKDWAQNRFRLAKCAMGFGREATGGLGGEIYVVTDESDEDVKNPKPGTLRWGVIQSKPLWITFGHNMVIKLQQELLVNSDKTIDGRGANVQIRGGGGLTLSYSKNVIIHNIRIRNIKSKAGGEISDTPVHYGFRTRSDGDAISLFGASKVWIDHVSMSNADDGLVDLIMYSTAITISNCHMTKHDDVMLFGANDLHVWDILMQVTVAFNHFGQGLTERMPRARYGWIHVVNNHYTHWQMYAIGGSTHPTIVSQGNRFIAPSNPDAKEVTKREYTDESVWRNWQWTSENDEMVNGAVFVPSGKPVDLATMKNMVPPRPGSEVRDLTRDAGALNCIEGRPC	441

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g2519	441	PRINTS	Pollen allergen Amb family signature	384	408	IPR018082	-
	Bisa07g2519	441	PRINTS	Pollen allergen Amb family signature	176	192	IPR018082	-
	Bisa07g2519	441	PRINTS	Pollen allergen Amb family signature	240	261	IPR018082	-
	Bisa07g2519	441	PRINTS	Pollen allergen Amb family signature	320	339	IPR018082	-
	Bisa07g2519	441	PRINTS	Pollen allergen Amb family signature	116	133	IPR018082	-
	Bisa07g2519	441	PRINTS	Pollen allergen Amb family signature	140	165	IPR018082	-
	Bisa07g2519	441	PRINTS	Pollen allergen Amb family signature	342	361	IPR018082	-
	Bisa07g2519	441	PANTHER	PECTATE LYASE 18-RELATED	44	439	IPR045032	GO:0030570
	Bisa07g2519	441	Pfam	Pectate lyase	175	359	IPR002022	-
	Bisa07g2519	441	SUPERFAMILY	Pectin lyase-like	94	432	IPR011050	-
	Bisa07g2519	441	Gene3D	-	93	434	IPR012334	-
	Bisa07g2519	441	Pfam	Pectate lyase, N terminus	29	79	IPR007524	GO:0030570
	Bisa07g2519	441	SMART	amb_all	168	365	IPR002022	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g2519	Bisa-ChrBisa07	56334314	56335720	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g2519	10	441	Polysaccharide Lyase	AT2G02720	53.556	1.99e-174	494