Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2518 ATGGCTAGAGTGAGCATGCTGTTAATGGCTGCCTTGGCCATTTCAATTCCATGCCTCGAGGCTAACATAGGAGATTTTGACGACTTTCTCAGAGCCAGAGCCATGGAAGCCCGAAGAGCAGCACTTCAGACGTACCATCCGAACCCTTTAAATGTGACGTCGGAGCTCAATTGGCACACTCACCTGGCGCTGGAAAGGCATAACAGCAGCAAAGGGAGGGGGCTCCGGGAGAAGAAAACCAAGAAGGGACCGTGCAGGGCCACGAACCCAATTGACCAATGCTGGAGGTGCGCGCCGAACTGGGCCGAAGATCGGTTTAGGCTGGCCTCATGCGGATTGGGCTTCGGCAAAAACGCCAGGGGTGGATTGGGTGGTCAGATCTACGTGGTGAAGGATAACTCTGACGATGACATGATAAACCCCAAACCAGGAACTCTGCGGTGGGGAGTCATCCAGAAGGAGCCTCTCTGGATCATATTCGAGCGCAACATGGTGATCAAGTTGCAGCAGGAGCTAATGGTGGCTTCCGACAAGACCATCGACGGTCGTGGCGCCAATGTTCAGATTAAGGGCGGCGGTGGCGTCACTCTCCAATTCGTCAACAACGTCATCATCCACAATCTTCGCATCCGCAATATCAAACCCAAGCCCGGCGGCAAGATCAGGGACCACGTCGACCATCTTGCCATTCGAACCCAGAGCGACGGTGACGCCATCAGCCTCTTCGGAGCCACCAATATCTGGATCGACCACGTTTCCCTGGCCGAAGCCGAGGATGGCCTTATCGACGCCGTCATGGGTTCCACCGGTATTACCATCTCCAACTGCCACATGACCAAGCATAACGATGTGATGCTGTTTGGATCTGGCGAACAATACGACGGGGACAAGATAATGCAGATAACGGTGGCGTACAACCACTTTGGGAATGGATTGATACAGAGGATGCCCAGATGCAGATATGGGTGGTACCACGTAGTGAACAACGACTACACTCACTGGATAATGTACGCCATCGGAGGAAGCTCGGCCCCGGTGATTCTTAGCCAAGGAAACAGATTCATCGCTCCTAACCAAGATGCAGCGAAGCAGGTCACAAACAGAGTGGATACGCCGGAAACTGTGTGGAGAGCGTGGCAATGGCAGTCGCAAAATGACCTGCTCGAGAACGGTGCCATTTTTATCTCCTCAGGACCCCCTATAGTTCCTCCATTCAAAAGAGACCTTATAATGGAACCCAGACCTGGGACTCAAGCCCAGCTACTTTCGGAGCAATCGGGTAGACTCTCTTGCAAAATTGGTAAGCCCTGTTAG 1314 0.532 MARVSMLLMAALAISIPCLEANIGDFDDFLRARAMEARRAALQTYHPNPLNVTSELNWHTHLALERHNSSKGRGLREKKTKKGPCRATNPIDQCWRCAPNWAEDRFRLASCGLGFGKNARGGLGGQIYVVKDNSDDDMINPKPGTLRWGVIQKEPLWIIFERNMVIKLQQELMVASDKTIDGRGANVQIKGGGGVTLQFVNNVIIHNLRIRNIKPKPGGKIRDHVDHLAIRTQSDGDAISLFGATNIWIDHVSLAEAEDGLIDAVMGSTGITISNCHMTKHNDVMLFGSGEQYDGDKIMQITVAYNHFGNGLIQRMPRCRYGWYHVVNNDYTHWIMYAIGGSSAPVILSQGNRFIAPNQDAAKQVTNRVDTPETVWRAWQWQSQNDLLENGAIFISSGPPIVPPFKRDLIMEPRPGTQAQLLSEQSGRLSCKIGKPC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2518 437 Gene3D - 88 430 IPR012334 -
Bisa07g2518 437 SMART amb_all 163 360 IPR002022 -
Bisa07g2518 437 PANTHER PECTATE LYASE 18-RELATED 37 435 IPR045032 GO:0030570
Bisa07g2518 437 Pfam Pectate lyase 170 354 IPR002022 -
Bisa07g2518 437 Pfam Pectate lyase, N terminus 22 69 IPR007524 GO:0030570
Bisa07g2518 437 SUPERFAMILY Pectin lyase-like 89 403 IPR011050 -
Bisa07g2518 437 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Bisa07g2518 437 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Bisa07g2518 437 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Bisa07g2518 437 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Bisa07g2518 437 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Bisa07g2518 437 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Bisa07g2518 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Bisa07g2518 437 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2518 Bisa-ChrBisa07 56325951 56327494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2518 4 437 Polysaccharide Lyase AT1G14420 53.125 7.97e-172 488