Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2445 ATGAACGACTTGATGTCCCGCTCCTTCTCCCTCCCCCGCGACGACCGAGTCTCGCCGGACAACCCCCACCATGTCATCCAGATGACGGCGTTGACGGACGGCGCCAATCTCGACAAGTTCTTCGAGGAAGTGGAGTCGCTCAAGAATGAGCTCACGGAGCTCGAGAGGCTCAACCAGAGCCTCCGTGCCTCTCACGAACAGAGCAAGACCCTCCACAACGCCAAGGCCGTCAAGGAGCTTCGCTCTCGCATGGAAGCTGACGTGGCTCTAGCGCTCAAGAAGGCCAAGCTCGTCAAGCTCCGGCTGGAGGCGCTGGACCGCTCCAACGAAGCCAACCGGAGCTTGCCCGGTTGCGGACCCGGTTCGTCCTCGGACCGTACCCGGACATCTGTGGTCAACGGGTTGAGGAAGAAGCTCAAAGACTCCATGGAGAGCTTCAACAACCTCAGGCAACAAATATCCTCCGAGTACAGGGAGACCGTACATCGTAGGTACTACACCGTCACCGGCGAGAATCCCGACGACAAAACCATTGACCTCCTCATCTCTTCCGGCGAGAGTGAAAATTTCCTACAAAAAGCGATCCAACAGCAGGGGAGGGCAAGCGTTTTGGACACAATCCAAGAGATTCAAGAGAGGCATGACGCGGTGAAAGAGATAGAGAGGAATCTGAATGAGCTGCACCAGGTGTTCTTGGACATGGCGGTGTTGGTGCAGTCCCAAGGGGAACAGTTGGATGATATAGAGAGCCACGTGGCGAGAGCTGATTCGTACGTGAGAGGTGGAGTGCAGCAGTTGCAGGTTGCGAGGAAGCACCAGAAGAACACCCGCAAATGGACTTGCATTGCCATTATAATTCTGCTCATTATTATATTGGTCATAGTTCTCCCCATTGTGCTAACCTATGCATCCAAAGCAATTCGACGTCGTCTGGCCCACGGACTGAAAGCCTGGGACCGGGGTGATGCTTGTTCCATTGAGACTTCCGTTTATGCTCAAGAATTTTCAGCATCGAGATTTCCGTCTTGTTTGTACTCTAGGCAATACTTTTCCACTTTGCTAAAACCAAGTAATCCCTTCCCTAAGGGGAATGACGTATGGGAAACTTGCGAACCTAAATACATGTTAAAAGAAAGAGGGAAAGATCAGATACCAAAGCTTTATGATACATTGATCCAAACTCAGACTAAAACACCCTAG 1200 0.5217 MNDLMSRSFSLPRDDRVSPDNPHHVIQMTALTDGANLDKFFEEVESLKNELTELERLNQSLRASHEQSKTLHNAKAVKELRSRMEADVALALKKAKLVKLRLEALDRSNEANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNNLRQQISSEYRETVHRRYYTVTGENPDDKTIDLLISSGESENFLQKAIQQQGRASVLDTIQEIQERHDAVKEIERNLNELHQVFLDMAVLVQSQGEQLDDIESHVARADSYVRGGVQQLQVARKHQKNTRKWTCIAIIILLIIILVIVLPIVLTYASKAIRRRLAHGLKAWDRGDACSIETSVYAQEFSASRFPSCLYSRQYFSTLLKPSNPFPKGNDVWETCEPKYMLKERGKDQIPKLYDTLIQTQTKTP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2445 399 Coils Coil 37 67 - -
Bisa07g2445 399 CDD SNARE_syntaxin1-like 206 267 - -
Bisa07g2445 399 PANTHER SYNTAXIN 54 289 IPR045242 -
Bisa07g2445 399 Gene3D - 34 167 - -
Bisa07g2445 399 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 34 164 - -
Bisa07g2445 399 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Bisa07g2445 399 Coils Coil 207 227 - -
Bisa07g2445 399 MobiDBLite consensus disorder prediction 1 21 - -
Bisa07g2445 399 Gene3D - 197 301 - -
Bisa07g2445 399 FunFam Syntaxin 132 200 300 - -
Bisa07g2445 399 CDD SynN 37 194 IPR006011 GO:0016020
Bisa07g2445 399 SMART tSNARE_6 202 269 IPR000727 -
Bisa07g2445 399 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bisa07g2445 399 SMART SynN_4 32 158 IPR006011 GO:0016020
Bisa07g2445 399 SUPERFAMILY t-snare proteins 35 262 IPR010989 GO:0016020|GO:0016192
Bisa07g2445 399 Pfam SNARE domain 243 295 IPR000727 -
Bisa07g2445 399 Coils Coil 132 156 - -
Bisa07g2445 399 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2445 Bisa-ChrBisa07 54849220 54851402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2445 32 281 SNARE and Associated Proteins AT3G11820 77.200 6.77e-143 407