Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2441 ATGAAGGACCCTGTAACCGTCTCCACCGGTATTACCTACGACCGAGAGAGTATCGAGAAATGGTTGCTCTCCGGCAACAACAAGACCTGCCCCGTCACCAAACAACCCCTTTCAGACCCCACTGATCTCACCCCCAACCACACCCTCCGCCGCTTGATTCAGGCCTGGTGTACCATGAACGCCTCCCACGGCATCCAGAGGATCCCCACTCCTAAGCCTCCCGTCACCAAATCCCAAATCGCCAAACTCCTCAGAGAAGCCTCCCAATCCCCTCTTTCCCAGCTTCGATGCCTCCGAACACTCAAATCCATTGCTTCCGACAGTGAAACTAACAAACGCTGCATCGGAACTTCGGCTGCTGTCCAGTTCTTAGCATCTGTCATATCGGCAGCCTCACCCGAACTCGAGGCTAACCAAGATGAGGCCTTGAGAATCCTCCACGCCCTCCAAATGTCCGAACCAACCTTAAAATCCCTCCTAGCTTACGACAATGGAGAATTCATTAACTCCTTAACCCGAGTCATGCAGAGAGGAACCTATGAGTCACAAGCGTATGCAGTTATGTTACTAAAATCTATGCTAGAAGTGGCCGAACCAATGCAGTTACTCAACGCAAGACCTGAATTGTTTGTTCAATTAGTAGAAATCCTGAGACAGCAAATCTCCCAGCAGACCACAAATGCGACACTCCAAATACTAATCCAATTGTGTGATTGGGGAAGAAACAGGAACAAAGCAGTGAAAGCAGGGGGCGTTTATGTAATAATAGAACTTCTTCTGGAGTGCACGGAGAGGAAGGCGAGTGAGATGATGCTGGTGGTGTTGGAGATGCTGTGTGGGTGTGCCGAGGGACGAGCAGAGTTGTTGAGCCACGGGGCTGGGATAGCCGTTGTGTCGAAGAAGATTCTGAGGGTGTCCAAGCTGGCAAACGACAGGGCTGTGAGGATTCTGATGTCTGTTTCCAAGTACTCGGCCACTCCGAAGTTTGTGGATGAGATGATGCAGTTGGGTGTGGTGGCGAAGCTGTGCTTGGCGCTGCAAACGGAGAGTGGAAGCAAGACGAAGGAGAGAGCCAGACACATTCTCAAACTTCATGCTCACGCATGGAGGAATGCTTCATGCATGCCTTCCTATCTGGCGGATTCCTTCTTAGCTTGA 1158 0.5104 MKDPVTVSTGITYDRESIEKWLLSGNNKTCPVTKQPLSDPTDLTPNHTLRRLIQAWCTMNASHGIQRIPTPKPPVTKSQIAKLLREASQSPLSQLRCLRTLKSIASDSETNKRCIGTSAAVQFLASVISAASPELEANQDEALRILHALQMSEPTLKSLLAYDNGEFINSLTRVMQRGTYESQAYAVMLLKSMLEVAEPMQLLNARPELFVQLVEILRQQISQQTTNATLQILIQLCDWGRNRNKAVKAGGVYVIIELLLECTERKASEMMLVVLEMLCGCAEGRAELLSHGAGIAVVSKKILRVSKLANDRAVRILMSVSKYSATPKFVDEMMQLGVVAKLCLALQTESGSKTKERARHILKLHAHAWRNASCMPSYLADSFLA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2441 385 Gene3D - 76 377 IPR011989 -
Bisa07g2441 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 68 IPR013083 -
Bisa07g2441 385 Pfam U-box domain 1 60 IPR003613 GO:0004842|GO:0016567
Bisa07g2441 385 PANTHER WDSAM1 PROTEIN 1 376 IPR045185 GO:0061630
Bisa07g2441 385 SMART Ubox_2 1 56 IPR003613 GO:0004842|GO:0016567
Bisa07g2441 385 SUPERFAMILY RING/U-box 1 63 - -
Bisa07g2441 385 SUPERFAMILY ARM repeat 82 362 IPR016024 -
Bisa07g2441 385 CDD RING-Ubox_PUB 1 41 IPR045210 -
Bisa07g2441 385 ProSiteProfiles U-box domain profile. 1 63 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2441 Bisa-ChrBisa07 54770280 54771437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2441 1 376 U-box Gene Family AT2G35930 56.316 4.86e-156 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Bisa07g2441 U-box 1.6e-13 CL0229