LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g2440	ATGGATCATGAGATTGATGTTCCTCCCTTCTTCACCTGCCCTGTTTCTTTAGAAATCATGAAGGACCCTGTAACCGTCTCCACCGGTATTACCTACGACCGAGAGAGTATTGAGAAATGGTTGCTCTCCGGCAACAACAAGACCTGCCCCGTCACCAAACAACCCCTTTCAGACCCCACTGATCTCACCCCCAACCACACCCTCCGCCGCTTGATTCAGGCCTGGTGTACCATGAACGCCTCCCACGGCATCCAGAGGATTCCCACTCCTAAGCCTCCCGTCACCAAATCCCAAATCACCAAACTCCTCAGAGAAGCCTCCCAATCCCCTCACTCCCAGCTTCGATGCCTCCGAACACTCAAATCCATCGCTTCCGACAGCGAAACTAACAAACGCTGCATCGAAGCTTCGGCTGCTGTCCAGTTCTTAGCATCTGTCATATCGGCAGCCTCACCCGAACTCGAGGCTAACCAAGATGAGGCCTTGAGAATCCTCCACGCCCTCCAAATGTCCGAGCCAACCTTAAAATCCCTCCTAGCTTACAACAATGGAGAATTCATTAACTCCTTAACCCGAGTCATGCAGAGAGGAACCTATGAGTCACAAGCGTATGCAGTTATGTTACTAAAATATATGCTAGAAGTGGCCGAACCAATGCAGTTACTCAACGCAAGACCTGAATTGTTTGTTCAATTAGTAGAAATCCTGAGACAGCAAATCTCCCAGCAGACCACAAATGCGACACTCCAAACACTAATCCAATTGTGTAATTGGGGAAGAAACAGGAACAAAGCAGTGAAAGCAGGGGGCGTTTATGTAATAATAGAACTTCTTCTGGAGTGCAAGGAGAGGAAGGCGAGTGAGATGATGCTGGTGGTGTTGGAGATGCTGTGTGGGTGTGCCGAGGGACGAGCAGAGTTGTTGAGCCACGGGGCTGGGATAGCCGTTGTGTCGAAGAAGATTCTGAGGGTGTCCAAGCTGGCAAACGACAGGGCTGTGAGGATTCTGATGTCTGTTTCCAAGTACTCGGCCACTCCGAAGTTTGTGGATGAGATGATGCAGTTGGGTGTGGTGGCGAAGCTGTGCTTGGCGCTGCAAACGGAGAGTGGAAGCAAGACGAAGGAGAGAGCCAGACACATTCTCAAACTTCATGCTCACGCATGGAGGAATGCTTCATGCATGCCTTCCTATCTGGCGGATTCCTTCTTAGCTTGA	1215	0.5045	MDHEIDVPPFFTCPVSLEIMKDPVTVSTGITYDRESIEKWLLSGNNKTCPVTKQPLSDPTDLTPNHTLRRLIQAWCTMNASHGIQRIPTPKPPVTKSQITKLLREASQSPHSQLRCLRTLKSIASDSETNKRCIEASAAVQFLASVISAASPELEANQDEALRILHALQMSEPTLKSLLAYNNGEFINSLTRVMQRGTYESQAYAVMLLKYMLEVAEPMQLLNARPELFVQLVEILRQQISQQTTNATLQTLIQLCNWGRNRNKAVKAGGVYVIIELLLECKERKASEMMLVVLEMLCGCAEGRAELLSHGAGIAVVSKKILRVSKLANDRAVRILMSVSKYSATPKFVDEMMQLGVVAKLCLALQTESGSKTKERARHILKLHAHAWRNASCMPSYLADSFLA	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g2440	404	ProSiteProfiles	U-box domain profile.	6	82	IPR003613	GO:0004842\|GO:0016567
	Bisa07g2440	404	SUPERFAMILY	ARM repeat	100	381	IPR016024	-
	Bisa07g2440	404	CDD	RING-Ubox_PUB	8	60	IPR045210	-
	Bisa07g2440	404	Gene3D	-	96	396	IPR011989	-
	Bisa07g2440	404	PANTHER	WDSAM1 PROTEIN	3	395	IPR045185	GO:0061630
	Bisa07g2440	404	SMART	Ubox_2	10	75	IPR003613	GO:0004842\|GO:0016567
	Bisa07g2440	404	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	87	IPR013083	-
	Bisa07g2440	404	SUPERFAMILY	RING/U-box	4	82	-	-
	Bisa07g2440	404	FunFam	RING-type E3 ubiquitin transferase	1	85	-	-
	Bisa07g2440	404	Pfam	U-box domain	7	79	IPR003613	GO:0004842\|GO:0016567

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g2440	Bisa-ChrBisa07	54741012	54742226	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g2440	1	395	U-box Gene Family	AT2G35930	57.393	5.43e-170	480

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Rcd1-like	Bisa07g2440		U-box	2.5e-20	CL0229