Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2439 ATGGATCATGAGATTGATGTTCCTCCCTTCTTCACCTGCCCTGTTTCATTAGAAATCATGAAGGACCCTGTAACCGTCTCCACCGGTATTACCTACGACCGAGAGAGTATCGAGAAATGGTTGCTCTCCGGCAACAACAAGACCTGCCCCGTCACCAAACAACCCCTTTCAGACCCCACTGATCTCACCCCCAACCACACCCTCCGCCGCTTGATTCAGGCCTGGTGTACCATGAACGCCTCCCACGGCATCCAGAGGATCCCCACTCCTAAGCCTCCCGTCACCAAATCCCAAATCGCCAAACTCCTCAGAGAAGCCTCCCAATCCCCTCACTCCCAGCTTCGATGCCTCCGAACACTCAAATCCATCGCTTCCGACAGCGAAACTAACAAACGCTGCATCGAAGCTTCGGCTGCTGTCCAGTTCTTAGCATCTGTCATATCTGCAGCCTCACCCGAACTCGAGGCTAACCAAGATGAGGCCTTGAGAATCTTCCACGCCCTCCAAATGTCCGAACCAACCTTAAAATCCCTCCTAGCTTACGACAATGGAGAATTCATTAACTCCTTAACCCGAGTCATGCAGAGAGGAACCCATGAGTCACAAGCCTATGCAGCTATGTTACTAAAATCTATGCTACAAGTGGCCGAACCAATGCAGTTACTCAACGCAAGACCTGAATTGTTTGTTCAACTAATAGAAATCCTGAGACAACAAATCTCCCAGCAGACCACAAATGCGACACTCCAAACACTAATCCAATTGTGTGATTGGGGAAGAAACAGGAACAAAGCAGTGAAAGCAGGGGGCGTTTATGTAATAATAGAACTTCTTCTGGAGTGCAAGGAGAGGAAGGCAAGTGAGATGATGCTGGTGGTGTTGGAGATGCTGTGTGGGTGTGCCGAGGGACGAGCAGAGTTGTTGAGCCACGGGGCAGGGATAGCCGTTGTGTCGAAGAAGATTCTGAGGGTGTCCACGCTGGCAAACGACAGGGCTGTGAGGATTCTGATGTCCGTTTCCAAGTACTCGGCCACTCCGAAGGTTGTGGATGAGATGATGCAGTTGGGTGTAGTGGCGAAGCTGTGCTTGGCGCTGCAAATGGAGAGTGGAGGCAAGACGAAGGAGAGAGCCAGACACATTCTCAAACTTCATGCTCACGTATGGAGGAATGCTTCATGCATGCCCTCCTATCTGGCGGATTCCTTCTTAGCTTGA 1215 0.5086 MDHEIDVPPFFTCPVSLEIMKDPVTVSTGITYDRESIEKWLLSGNNKTCPVTKQPLSDPTDLTPNHTLRRLIQAWCTMNASHGIQRIPTPKPPVTKSQIAKLLREASQSPHSQLRCLRTLKSIASDSETNKRCIEASAAVQFLASVISAASPELEANQDEALRIFHALQMSEPTLKSLLAYDNGEFINSLTRVMQRGTHESQAYAAMLLKSMLQVAEPMQLLNARPELFVQLIEILRQQISQQTTNATLQTLIQLCDWGRNRNKAVKAGGVYVIIELLLECKERKASEMMLVVLEMLCGCAEGRAELLSHGAGIAVVSKKILRVSTLANDRAVRILMSVSKYSATPKVVDEMMQLGVVAKLCLALQMESGGKTKERARHILKLHAHVWRNASCMPSYLADSFLA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2439 404 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Bisa07g2439 404 PANTHER WDSAM1 PROTEIN 3 395 IPR045185 GO:0061630
Bisa07g2439 404 CDD RING-Ubox_PUB 8 60 IPR045210 -
Bisa07g2439 404 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Bisa07g2439 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Bisa07g2439 404 Gene3D - 96 392 IPR011989 -
Bisa07g2439 404 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Bisa07g2439 404 SUPERFAMILY RING/U-box 4 82 - -
Bisa07g2439 404 SUPERFAMILY ARM repeat 100 371 IPR016024 -
Bisa07g2439 404 FunFam RING-type E3 ubiquitin transferase 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2439 Bisa-ChrBisa07 54721511 54722725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2439 1 395 U-box Gene Family AT2G35930 56.892 7.53e-170 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Bisa07g2439 U-box 2.5e-20 CL0229