Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2406 ATGTCAGCTGTGAGTGTGAACCATGGACGTTGGCCAAAACCAGTGGAAGCCACGATACCGATGGTGGCGACCAGCCATGAGTACTCAATCCCGAATCGGTATAGGACCTACACCCCTAAGAAGAACCCATGCCAATCCAATAGTTGTGGGGTGCCACACACTCTGCTGCTAGACAAAGGATCAATTCCCACTAGTGTTGGTAATGGAAATATGGTTTTGCGTCTGAGAGTCTCCACCTTCCTCCTCCCTCCGAGCGCCGCTCAAGTCTCTACAGGAGCCACCATGGGACGCGTCCGCACGAAGACAGTCAAGAAGTCTTCCCGCCAAGTCATCGAGAAGTACTACTCTCGAATGACCTTGGATTTCCATACCAACAAGAAGATTCTCGAGGAGGTTGCTCTCATTCCCTCCAAGAGGCTCCGCAACAAAATCGCCGGCTTCTCAACTCACCTTATGAAGAGGATCCAGAAGGGACCAGTTCGTGGAATTTCCCTCAAGCTTCAGGAGGAGGAGAGGGAGCGTCGTATGGACTTCGTGCCTGACGTCTCCGCAATCAAGACTGAACAAATTGAGGTTGACAAGGAGACCCTAGACATGCTTAATGCTCTTGGTATGAATGAGATTCCAGGGCTTGTCCAAGTCGACCCGGCGCCTGTTCAGCAGCAGCTGGGATTTGGTCGTGGTGGATTTGGTGGACCTCGGAGGTATTAG 711 0.5204 MSAVSVNHGRWPKPVEATIPMVATSHEYSIPNRYRTYTPKKNPCQSNSCGVPHTLLLDKGSIPTSVGNGNMVLRLRVSTFLLPPSAAQVSTGATMGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLNALGMNEIPGLVQVDPAPVQQQLGFGRGGFGGPRRY 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2406 236 SUPERFAMILY Rps17e-like 95 156 IPR036401 GO:0003735|GO:0005840|GO:0006412
Bisa07g2406 236 PANTHER 40S RIBOSOMAL PROTEIN S17 95 221 IPR001210 GO:0003735|GO:0005840|GO:0006412
Bisa07g2406 236 Gene3D - 95 156 IPR036401 GO:0003735|GO:0005840|GO:0006412
Bisa07g2406 236 FunFam 40S ribosomal protein S17 95 156 - -
Bisa07g2406 236 ProSitePatterns Ribosomal protein S17e signature. 135 150 IPR018273 GO:0003735|GO:0005840|GO:0006412
Bisa07g2406 236 Hamap 30S ribosomal protein S17e [rps17e]. 95 157 IPR001210 GO:0003735|GO:0005840|GO:0006412
Bisa07g2406 236 Pfam Ribosomal S17 95 214 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2406 Bisa-ChrBisa07 54269192 54271842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2406 95 236 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 80.000 5.35e-77 227