Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2397 ATGTCCATAAATCACTACTCATCTTCGGACATTCCAGAGCCGACGACGCTGTGGTGGAATACTCAGCAACACCACGAACCCTCCCCTTCCTGGGCTTCCCACATCTGCCAGGTGTCCCACTCCTCCCCCACCCAGCGTCCCCGCGGCTTCAACCTCAATCACGACGACGAGGAGGACGACGAAGACAATATGATTCCCCAGCCCACCCCCCAAGGGGACAAGGGGGAGGCTACTGCGGACGAGGAAAAGGAGGCGATGTTCGAGAAACCATTGACGCCGAGCGACGTGGGGAAGCTGAACAGACTGGTGATCCCGAAGCAGCACGCGGAGAAGTACCTGCCTCTGGGAGAGTCGGGAGGGGAGAGCAAGGGGGTGTCGCTGAGTTTCGAGGACGAGTGCGGAAAGTGCTGGAGGTTCCGTTACTCTTACTGGAATAGCAGCCAGAGCTACGTTTTGACCAAAGGCTGGAGCCGTTACGTCAAGGACAAGCGCCTCGATGCTGGCGACGTCGTTTTCTTCCTCCGCCACCGCACCCACCCCCACCGCCTCTTCATCCACTGCGGCCGCCGCCGCCACCACTCTCCCACCACCCCCATCCCCAATGTTGCTCTCAAAGCCTGGACCACAACCCCACTCTCGTCCCTCTATTCTGCGCACCCTTATCCTACGCACCCTCCTCACCCCTTCCCATACCACCAACCTCCTTACTCTCGTCATGCAGGTGGAGGGTCGGATGGGGATGAGGGCAAAACGACGTCGGCGGTGGGGAACAGCTCCAGCTCGAGCTCTCGGGTACTGAGGCTGTTCGGTGTAAACATGGAATGCCAACCCGACGAATCTGGATCCTCCACACCCGAATGCTCCTACGTGTCACCGTCCCAGGGTACACCCACCCAACACCAACACCAACACCACCACTGCTACGGCCATTATTATCGTCAGGCTCCTTATTCTTCTAATCACATGGATGCCAACCAGATGAGAAATCGCCGAGGATAA 999 0.5856 MSINHYSSSDIPEPTTLWWNTQQHHEPSPSWASHICQVSHSSPTQRPRGFNLNHDDEEDDEDNMIPQPTPQGDKGEATADEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKYLPLGESGGESKGVSLSFEDECGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVFFLRHRTHPHRLFIHCGRRRHHSPTTPIPNVALKAWTTTPLSSLYSAHPYPTHPPHPFPYHQPPYSRHAGGGSDGDEGKTTSAVGNSSSSSSRVLRLFGVNMECQPDESGSSTPECSYVSPSQGTPTQHQHQHHHCYGHYYRQAPYSSNHMDANQMRNRRG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2397 332 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 48 285 IPR044800 GO:0003700
Bisa07g2397 332 MobiDBLite consensus disorder prediction 276 302 - -
Bisa07g2397 332 Gene3D - 76 198 IPR015300 -
Bisa07g2397 332 ProSiteProfiles B3 DNA-binding domain profile. 87 189 IPR003340 GO:0003677
Bisa07g2397 332 MobiDBLite consensus disorder prediction 18 80 - -
Bisa07g2397 332 SUPERFAMILY DNA-binding pseudobarrel domain 84 190 IPR015300 -
Bisa07g2397 332 SMART B3_2 87 190 IPR003340 GO:0003677
Bisa07g2397 332 MobiDBLite consensus disorder prediction 275 306 - -
Bisa07g2397 332 CDD B3_DNA 86 178 IPR003340 GO:0003677
Bisa07g2397 332 MobiDBLite consensus disorder prediction 224 262 - -
Bisa07g2397 332 Pfam B3 DNA binding domain 87 187 IPR003340 GO:0003677
Bisa07g2397 332 MobiDBLite consensus disorder prediction 18 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2397 Bisa-ChrBisa07 54169779 54172783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2397 80 280 RAV Transcription Factor Family AT5G06250 52.113 1.92e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bisa07g2397 B3 3.1e-27 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2114 03 30249096 30251666 Bisa07g2397 07 54169779 54172783 CCT
Bisa07g2397 07 54169779 54172783 Bisa07g2397 07 54169779 54172783 ECH