Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2387 ATGTCCATTCCAGCAGGCACTTCAAACAAAAGAAATCCAAGAAACCCTAGAGATGATCCTATAAATAATCATTTGCCATTCTGTTCTTACGGCAGAGGCGAATTGAGAGCAGCAGCGATGCAGATATTTGTCAAAACCCTAACTGGGAAGACAATAACTCTCGAGGTCGAGAGCAGCGACACTATCGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCGCCGGATCAGCAACGTTTGATATTTGCTGGCAAGCAGCTCGAAGACGGTCGAACATTAGCTGATTACAACATTCAAAAGGAGTCCACGCTTCATCTTGTATTGAGACTTCGTGGCGGTATCATAGAGCCTTCGCTGATGGCTTTGGCTCGCAAGTACAACCAAGACAAGATGATCTGCCGCAAATGCTATGCTCGTCTACATCCAAGGGCTGTAAACTGCCGGAAAAAGAAGTGTGGTCACAGTAATCAGTTGAGGCCAAAGAAGAAGATCAAGTAA 504 0.4504 MSIPAGTSNKRNPRNPRDDPINNHLPFCSYGRGELRAAAMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2387 167 FunFam ubiquitin-60S ribosomal protein L40 118 167 - -
Bisa07g2387 167 PANTHER UBIQUITIN 40 126 - -
Bisa07g2387 167 ProSiteProfiles Ubiquitin domain profile. 40 115 IPR000626 GO:0005515
Bisa07g2387 167 FunFam Ubiquitin-60S ribosomal L40 fusion 40 117 - -
Bisa07g2387 167 SUPERFAMILY Ubiquitin-like 39 115 IPR029071 -
Bisa07g2387 167 PRINTS Ubiquitin signature 71 91 IPR019956 -
Bisa07g2387 167 PRINTS Ubiquitin signature 92 113 IPR019956 -
Bisa07g2387 167 PRINTS Ubiquitin signature 50 70 IPR019956 -
Bisa07g2387 167 Gene3D - 35 118 - -
Bisa07g2387 167 CDD Ubl_ubiquitin 40 115 - -
Bisa07g2387 167 Pfam Ubiquitin family 42 113 IPR000626 GO:0005515
Bisa07g2387 167 ProSitePatterns Ubiquitin domain signature. 66 91 IPR019954 -
Bisa07g2387 167 Gene3D - 119 167 IPR038587 -
Bisa07g2387 167 Pfam Ribosomal L40e family 117 166 IPR001975 GO:0003735|GO:0005840|GO:0006412
Bisa07g2387 167 SMART Ribosomal_L40e_3 116 167 IPR001975 GO:0003735|GO:0005840|GO:0006412
Bisa07g2387 167 MobiDBLite consensus disorder prediction 1 23 - -
Bisa07g2387 167 SMART ubq_7 40 111 IPR000626 GO:0005515
Bisa07g2387 167 SUPERFAMILY Zn-binding ribosomal proteins 115 166 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2387 Bisa-ChrBisa07 53945806 53949376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2387 40 167 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 8.34e-92 261