Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2377 ATGCTGGGAAAGAAAGGTAGTGTATGCCAAAATCCCGAGTCACCAGAGAAGCATAGTGACCTTGAAAAGCCCACAGATTCTGAAGAGAAGGTAGACTTTGATGGGGACAATGATCAAGAGGATACCATGGAGGAAGAAGTTGAATACGAAGAAGTAGAGGAGGAGGAAGAAGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGGGGATGAGGAGGTGGAGGAAGAGGAAGAGAGTGAACAGTCTGAGAAAGGCTCAGATGGTGAAGAGAAAATGAAAGCTGCAGACAGTGAGGATGAAGACGAGAAAAAGAAGCATGCAGAGCTCCTTGCACTTCCACCTCATGGGTCAGAGGTTTACCTTGGTGGCATTCCTCATAATGCTTCTGAAGAGGATTTGAGGAACTTTTGTAAATCAGTGGGAGATGTCTCAGAGGTTAGGATTATGAAGGGAAAGGAATCTGGTGAAGCTAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAAATGGCTTCTAAGGCTATTGAGAAACTGAACAAATCTAAATTTCAGCAAAATAAAATAAAATGCTCAACATCTCAAGCAAAGCATAGGTTGTTTATTGGTAATGTCCCTAGAAATTGGACAGAGGAAGATTTGAGGAAGGCTGTTACAGGGATTGGGCCTGGAGTCAATTCTGTTGAACTTTTGAAGGAATCACATAATTCAGCCCGTAATCGGGGATTTGCTTTTATTGAGTATTACAATCATGCATGTGCAGAATATTCTAGGCAGAAGATGTCAAACCCTAAGTTTAAACTTGACATCAATGCTCCAACAGTGAGCTGGGCTGACCCTAAGAATGCTGAATCATCTGCTTCGTCCCAGGTAAAGGCAGTGTATGTAAAGAATCTACCAGAAAACATTACTCAGGATCGACTTAAGGGGTTGTTTGACCATCATGGAAAGATTGCAAAAGTGGTACTACCTCCTGCAAAAGCAGGACATGAGAAAAGCAGATTTGGTTTTGTTCACTTTACTGAGAGGTCAAGTGCCATGAAGGCATTGAAGAATACTGAGAAATATGAAATTGATGGCCAAGTTTTGGAGTGTTCACTAGCAAAGCCACAAGCAGATCAGAAGTCATCTGGGACACCAAATTCAAAGAACTCGGTTGTACTTCCAACTTATCCACCTCGCATTGGTTATGGTATGGTTGGAGGTGCCTATGGTGCTATGGGTGCAGGATATGCTGCAGCTGGCTTAACACAACCACTGGTCTATGGTGGGGGAGCAACACCTGCTGGCAGGGCAATGATGCCAATGCTTTTACCAGATGGAAGGGTTGGATATGTATTGCAACAGCCAGGGTTGCAACAACATACCCCTAAATCAACACCTCGAGGTGGCAGGAGTAGTGGTAGCTCAGTTGGTGGGAAACGCAGCAAGGATAAGAACCGTAGTCAATATCATCCCTACTAA 1458 0.4403 MLGKKGSVCQNPESPEKHSDLEKPTDSEEKVDFDGDNDQEDTMEEEVEYEEVEEEEEEEEEEEEEEEGDEEVEEEEESEQSEKGSDGEEKMKAADSEDEDEKKKHAELLALPPHGSEVYLGGIPHNASEEDLRNFCKSVGDVSEVRIMKGKESGEAKGYAFVTFKTKEMASKAIEKLNKSKFQQNKIKCSTSQAKHRLFIGNVPRNWTEEDLRKAVTGIGPGVNSVELLKESHNSARNRGFAFIEYYNHACAEYSRQKMSNPKFKLDINAPTVSWADPKNAESSASSQVKAVYVKNLPENITQDRLKGLFDHHGKIAKVVLPPAKAGHEKSRFGFVHFTERSSAMKALKNTEKYEIDGQVLECSLAKPQADQKSSGTPNSKNSVVLPTYPPRIGYGMVGGAYGAMGAGYAAAGLTQPLVYGGGATPAGRAMMPMLLPDGRVGYVLQQPGLQQHTPKSTPRGGRSSGSSVGGKRSKDKNRSQYHPY 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2377 485 MobiDBLite consensus disorder prediction 83 103 - -
Bisa07g2377 485 CDD RRM_SF 118 190 - -
Bisa07g2377 485 MobiDBLite consensus disorder prediction 1 103 - -
Bisa07g2377 485 SUPERFAMILY RNA-binding domain, RBD 279 375 IPR035979 GO:0003676
Bisa07g2377 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 278 IPR000504 GO:0003723
Bisa07g2377 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Bisa07g2377 485 Coils Coil 40 78 - -
Bisa07g2377 485 MobiDBLite consensus disorder prediction 31 82 - -
Bisa07g2377 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 361 IPR000504 GO:0003723
Bisa07g2377 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 188 IPR000504 GO:0003723
Bisa07g2377 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 264 IPR000504 GO:0003723
Bisa07g2377 485 SMART rrm2_1 291 364 IPR003954 GO:0003676
Bisa07g2377 485 SMART rrm2_1 117 190 IPR003954 GO:0003676
Bisa07g2377 485 MobiDBLite consensus disorder prediction 445 485 - -
Bisa07g2377 485 Gene3D - 277 403 IPR012677 -
Bisa07g2377 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 368 IPR000504 GO:0003723
Bisa07g2377 485 MobiDBLite consensus disorder prediction 447 469 - -
Bisa07g2377 485 MobiDBLite consensus disorder prediction 367 386 - -
Bisa07g2377 485 SMART rrm1_1 291 364 IPR000504 GO:0003723
Bisa07g2377 485 SMART rrm1_1 117 190 IPR000504 GO:0003723
Bisa07g2377 485 SMART rrm1_1 197 274 IPR000504 GO:0003723
Bisa07g2377 485 MobiDBLite consensus disorder prediction 15 30 - -
Bisa07g2377 485 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 197 277 - -
Bisa07g2377 485 Gene3D - 10 196 IPR012677 -
Bisa07g2377 485 Gene3D - 197 276 IPR012677 -
Bisa07g2377 485 MobiDBLite consensus disorder prediction 470 485 - -
Bisa07g2377 485 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 21 464 - -
Bisa07g2377 485 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 279 388 - -
Bisa07g2377 485 SUPERFAMILY RNA-binding domain, RBD 113 263 IPR035979 GO:0003676
Bisa07g2377 485 MobiDBLite consensus disorder prediction 368 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2377 Bisa-ChrBisa07 53705563 53708752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2377 118 435 Eukaryotic Initiation Factors Gene Family AT4G34110 24.862 3.21e-12 67.0