Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2317 ATGGATATGGAGAACTCCCGCAGATCGTTTGATAGAATGAGAGAAGCAGGTATGAAAAAACCCCGACTAACCAACGAGCTCGAGCGTGGCTCAAATCAAAGTGTTCGACCATTTCCTCAACGACAAGTGGCTCCCGGGATTAATACGTTCGCTTCGGCACGGTTTCGAACAAACGACAGAGATTCAGGAAGCAGTGATTCGGGTCGCGGGCAACTGCTGCACCAGGAGCTAGTAACTCAGTACAGGACGGCGCTTGCTGAGCTGACTTTTAATTCAAAACCAATAATTACAAACTTGACTATAATTGCTGGCGAGAATCTCTATGCCGCGAAGGCAATTGCTGCCACTGTTTGCTCTAACATACTAGAGGTTCCAAGTGAGCAAAAGCTGCCATCACTTTATCTTTTGGACAGTATAGTTAAGAATATTGGGCGGGATTATATAAAATACTTCGCTGCCAGACTACCTGAGGTATTCTGCAAGGCTTACAGACAGGACCCATCTATCCATTCAAGCATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCGTCTGGCCCTTCAGATGATTGAGAAAGAACTTGGATTTACTCCGGCAGCCAATGATTCATCTTCTACATCAACCATGCTCAGGAGTGATTCACAGTCACAAAGGCAGCCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAACGTCTTCAGCAGTCCAGTAGGGATAAAGGAACAGCTAATGATATGACTGGAGCTATTGCAAGCTCAACTGAGGGCACAGTGAGGCCAGATAGAGCTTCGGTTGCTGCACGACCTTGGGCCGTTGCCCCACTTAACATGCATAATATTACGCATGCTAATAGAGATTCATTTAATGATTCTCTTCCTGAAAAGAGCATTAGTGTGTCATTTGGAGGCAATGGACATGGTTCTGATCTTTCAAGTAAAATGGGCTTGGGTATTGGAAGAACTGGTAGTAGGATCACTGATTTAGGACATGAGAAGGCATGGTATAAAACGGGCAGTGATATTGCAGAGGTTAAGTCTATGCAAAGAAATGGTTTAAGTCTCAAGCATAGTCTTTCGAATCATGAAGCACCAAAGTCCTTGAATTTGGATACACATCACCTGACAATACAAAGCATGACCAACATACCCGCAAGGAGTGGTGTGATGTCTAATATCTGGAAAAATTCTGAGGAAGAGGAGTTCATGTGGGATGATACAGACTCCAGGTTAACTGATCATGATGCATCCAGTGTCTCTAATAACTTGGGCGAAGATCATTGGCCTGCTGATGATGAAAATTTGGCAGTTGAAGATCGCATCCGAGTCACACACCATTTTGGGGCAAAGGTCAATGGAGAAATATCCACCAAATCTCTGTCATGGCAATTGCAGGACCAGCACTCAATTGATGAGCTAAATCGTAAGCCAGGTCGGTCAGAATGCTTTGCATCCACTCTTGGTGGGTTACCAAGCAGCATGAAGTCTTCCGCTGTCAGGATGGGTAATCAGCCTTTCCTGCCTTTGGCAGGAATGGTGGGACAGCAAAAATTTCACACTGTTCAAGCTGAATCCCCTTCTGGGCAGTCACCTTTGCGACAACATTCTCCATCACCACCAGTAATTGTGTGCCATTCTCAGCACGTGCAAAATTTGGCCAAGCAAGACCATCAACAGACTCTTAAAACATCTCAATTTTCAGGAGATCTGGAGGGTCAATATATTCAAGATTCTTCAACCACCCTTCCATCTAATGTTCGGGTTGGTCACTTGCAAAAATCACAGCAAAGGGACTTGCAAGGTCCAGTACCTTCAGTGACTTATCAATCTAGGCATCGTACTGCAGTTTCAGAGCAGCAGCAGCAGCAGCTTGGCTCTTCTCATACTGAAGTTTCTGGTAAGACTGAGAAGCTATCCCAGTCAAAAGTATCTCTAGCCAGTGAAACTTCTGATCATTCATCCCCAAGTAGTTTGTTAGCTGCAGTTATAAAGAGTGGAATCTTCAATAGTTCAATTATGAGTAATCCACCTTCTGCAAGTTCCATGGATACAAGGATTCTACAATTGCAATCGGGGGTTCAGCATACACAACTAGATAGACCTCAGGGAAAGGTTGTGTTCTCATCCACATTTGGTACTTCTAGTGATGACTTGTCCACACTTACAAAAATATCTGATGGAAAGGTTGGACAACCACCAAGGGCATCTGCGCTACCTCTAGCTTCCTCTATTGCGAGTAGTGCCTCATCTCAGACCGCAAATTCCACCAATACCTCTAGTCAAATTTCAAACCTTTTAAGTTCATTGGTTGCAAAGGGTTTGATATCTGCAAGGTCAGAGTTATCAACTACAATGCCAACTCGATTGGAAGACCGAAGCCACAGCGTTACCACCAGTAGCTCTTCACCAGTTGCTTCTGTCTCTGGTTCTCTAGTTGTCCCTGCATCATCTATTGGAGATGAGGTAGATCATGATGTAAACAGCGCTGTTTCCTTATCTCATTCAACTGCCCCAGAAATAAGAAATCTTATTGGCTTTGAGTTTAAGCCTGATATAATTCGACAATTGCATCCATCAGTGATTAGAGAATTATTGGACGATCTTTCTCATCATTGCGACATTTGTGGCCTTAGGCTTAAACATCAAAAACAGTTCAATGGACATTTGGAGTGGCATGCTACGAGAGAAAAAGAACAAAATGATCTAATTAGGGGATCTAGAAGATGGTATGCAAAGTCAAATGACTGGATTGCTGGCAAGGCTGAATATCCAACCGAGTCTGAGTCTACTGATTCGGTAGACACATACTGTGAGAAAGCAGACAAGATTGAGCTGGGTGTAATGATTCCGTCAGATGAAAATCAATGCTTGTGTGTGTTCTGTGGCGAACTATTTGAAGATGTTTACTGTCAAGAAAGGGATGAATGGATGTTCAAGGGGGCTGTTTATCTGACCAACTCAGATAATGATGGTGAGATGGGTATTAGAAATGGCGGTACTGCTAGTGGTCCCATTATTCATGCAAAATGCTTATCAGAGACATCCATACCCAGTGTCACCAAGATGGGGGGGAAAGGAAAAAAAAGAAAAAAAGAAATGGTGAAGTGA 3117 0.4357 MDMENSRRSFDRMREAGMKKPRLTNELERGSNQSVRPFPQRQVAPGINTFASARFRTNDRDSGSSDSGRGQLLHQELVTQYRTALAELTFNSKPIITNLTIIAGENLYAAKAIAATVCSNILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQDPSIHSSMRHLFGTWKGVFPRLALQMIEKELGFTPAANDSSSTSTMLRSDSQSQRQPHSIHVNPKYLERQRLQQSSRDKGTANDMTGAIASSTEGTVRPDRASVAARPWAVAPLNMHNITHANRDSFNDSLPEKSISVSFGGNGHGSDLSSKMGLGIGRTGSRITDLGHEKAWYKTGSDIAEVKSMQRNGLSLKHSLSNHEAPKSLNLDTHHLTIQSMTNIPARSGVMSNIWKNSEEEEFMWDDTDSRLTDHDASSVSNNLGEDHWPADDENLAVEDRIRVTHHFGAKVNGEISTKSLSWQLQDQHSIDELNRKPGRSECFASTLGGLPSSMKSSAVRMGNQPFLPLAGMVGQQKFHTVQAESPSGQSPLRQHSPSPPVIVCHSQHVQNLAKQDHQQTLKTSQFSGDLEGQYIQDSSTTLPSNVRVGHLQKSQQRDLQGPVPSVTYQSRHRTAVSEQQQQQLGSSHTEVSGKTEKLSQSKVSLASETSDHSSPSSLLAAVIKSGIFNSSIMSNPPSASSMDTRILQLQSGVQHTQLDRPQGKVVFSSTFGTSSDDLSTLTKISDGKVGQPPRASALPLASSIASSASSQTANSTNTSSQISNLLSSLVAKGLISARSELSTTMPTRLEDRSHSVTTSSSSPVASVSGSLVVPASSIGDEVDHDVNSAVSLSHSTAPEIRNLIGFEFKPDIIRQLHPSVIRELLDDLSHHCDICGLRLKHQKQFNGHLEWHATREKEQNDLIRGSRRWYAKSNDWIAGKAEYPTESESTDSVDTYCEKADKIELGVMIPSDENQCLCVFCGELFEDVYCQERDEWMFKGAVYLTNSDNDGEMGIRNGGTASGPIIHAKCLSETSIPSVTKMGGKGKKRKKEMVK 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2317 1038 CDD CID_Pcf11 78 196 IPR047415 -
Bisa07g2317 1038 MobiDBLite consensus disorder prediction 27 42 - -
Bisa07g2317 1038 SUPERFAMILY ENTH/VHS domain 75 202 IPR008942 -
Bisa07g2317 1038 MobiDBLite consensus disorder prediction 1 42 - -
Bisa07g2317 1038 MobiDBLite consensus disorder prediction 200 225 - -
Bisa07g2317 1038 FunFam polyadenylation and cleavage factor homolog 4 71 197 - -
Bisa07g2317 1038 SMART 558neu5 76 197 IPR006569 -
Bisa07g2317 1038 Gene3D - 70 197 IPR008942 -
Bisa07g2317 1038 ProSitePatterns Zinc finger C2H2 type domain signature. 875 895 IPR013087 -
Bisa07g2317 1038 ProSiteProfiles CID domain profile. 73 200 IPR006569 -
Bisa07g2317 1038 MobiDBLite consensus disorder prediction 1 26 - -
Bisa07g2317 1038 MobiDBLite consensus disorder prediction 594 657 - -
Bisa07g2317 1038 MobiDBLite consensus disorder prediction 716 745 - -
Bisa07g2317 1038 MobiDBLite consensus disorder prediction 241 263 - -
Bisa07g2317 1038 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 33 1026 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Bisa07g2317 1038 MobiDBLite consensus disorder prediction 523 543 - -
Bisa07g2317 1038 Pfam CID domain 83 181 IPR006569 -
Bisa07g2317 1038 MobiDBLite consensus disorder prediction 200 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2317 Bisa-ChrBisa07 52808434 52815891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2317 76 414 C2H2 Transcription Factor Family AT4G04885 40.227 5.85e-54 201