Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2284 ATGGCGGTTTCTCCGACGGTTGCCGCCGCACCGGCATCGCTCTACGTCGGCGACCTCCACCCTGACGTCAACGATGGTCAGCTGTTCGAAGCATTCTCTGAGTTCAAGAGCCTCGCGTCTGTCCGGATCTGTAGGGACTCCTCTACTGGCAGGTCACTCTGTTACGGCTATGCCAACTTCATCTCTCCCCAGGATGCTATTCATGCTATTGAGGTAAAGAATCATTCTACACTGAATGGAAAAGTGATGAGAGTTATGTGGTCACATCGTGATCCTGACGCAAGGAAAAGTGGTATAGCGAATGTGTTTGTTAAGAACTTAGCTGAATCTATAGATAATGTGGAATTACATGACCTCTTTCAAAAATTTGGGAAAATTTTGTCCAGTAAAGTTGTCGTGTCTGAGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCACAGAAATCTGCTAATGCTGCCATTGAAAAGCTGAATGGCTCCACTGTTAGAGATAAACAGATATATGTCGGGAAGTTTCTCAGAAAAAGTGACCGAATTTTGCCTGGCTCTGATGTCAAATTTACAAATTTGTTCATGAAAAACTTGGACCCAGAGATCACAGAGGAGCTTCTACAGGAAAAGTTCTCCTCCTTCGGCAAAATTGTTAGCTTGGCTATTGCCAAGGACGATAATGGACTATCAAAGGGTTTCGGCTTTGTGAACTATGATAATCCAGATGATGCTAGACGAGCAATGGAATCAATGAATGGATCACAACTTGGTTCAAAGATTATATATGTAGCCAGGGCACAAAAGAAGGCTGAGCGTGAGCAAATCCTGCATCATCAGTTTGAGGAGAAACGTAAGGAACAAATCTTGAAATTTAAGGGATCAAACGTTTATGTGAAGAACATCGATGATGATGTCAGTGATGAAGAATTAAGAGATCATTTTAGTTCATGTGGCACAATAACATCTGCAAAAATTATGCGAGACGACAAAGGGATAAGCAAGGGTTTTGGTTTTGTCTGCTTCTCTACCCCTGAGGAGGCCAATAAAGCAGTGAACAATTTTCATGGATGTATGCTTCATCGCAAACCGCTCTATGTTGCTATTGCTCAGAGGAAGGAGGATAGGCAGGCACAATTGCAGGTCCAGTATGCACAGCGAATAGCAGGACTGGCTGGACCTTCAACTGCTGTTATCCCTGGTGGATATCCTCCTTACTACTATGCAGCTACTGGTGTTGTTTCACATGTGCCTTCCCGACCTGGACTAGTGTATCAACCACTGGGATTGAGACCAGGATGGAGGCCTAATGGCTTTGCACCCCTTACTAGACCATTTCAACCGTCGCCAGTTTCTGTTCCTGCTACTTCTACGAGGCAGCACAGACAAAATTGGGGCAGGATGAATGGGCAGACAACTTCTCAGGGAAATGTTCACTCGGGTACGTACATGCCTCAAGCACAACAGCCGGCTCAGTCGATGGCCTCTTCAAAAGAATTAACCACTCACCAGCGGACTGGGCAGACTAAGTATGTGGCCGGTGGGCGCCAACGTGAGATGGAAAAAGGATCTGGAGTCTCATCCGGTGGTTTCAACTCTGCTGTTGGGGTTCAAGGATCAGAAATGCTACATAGCATGCTTGCTGCTGCTACTCCTGAGCAGCAAAAGCAAATACTTGGCGAGCATCTTTACCCACTTGTCCAGAAACTCAAGCCTAGCCTCGCAGCGAAGATTACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGCTTCTTCTAGAATCTCCAGAGTCTCTCTCTGCCAAGGTGGAAGAAGCTGTGCAGGTGCTTAAGAACTCTAAGACCAAAGTGTCAGGCCAGGATGTTCTTCATCCAAATTACCTTTCGGCTGAGGTTGCAGTGAACTGA 1908 0.4591 MAVSPTVAAAPASLYVGDLHPDVNDGQLFEAFSEFKSLASVRICRDSSTGRSLCYGYANFISPQDAIHAIEVKNHSTLNGKVMRVMWSHRDPDARKSGIANVFVKNLAESIDNVELHDLFQKFGKILSSKVVVSEDGKSKGYGFVQFESQKSANAAIEKLNGSTVRDKQIYVGKFLRKSDRILPGSDVKFTNLFMKNLDPEITEELLQEKFSSFGKIVSLAIAKDDNGLSKGFGFVNYDNPDDARRAMESMNGSQLGSKIIYVARAQKKAEREQILHHQFEEKRKEQILKFKGSNVYVKNIDDDVSDEELRDHFSSCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNNFHGCMLHRKPLYVAIAQRKEDRQAQLQVQYAQRIAGLAGPSTAVIPGGYPPYYYAATGVVSHVPSRPGLVYQPLGLRPGWRPNGFAPLTRPFQPSPVSVPATSTRQHRQNWGRMNGQTTSQGNVHSGTYMPQAQQPAQSMASSKELTTHQRTGQTKYVAGGRQREMEKGSGVSSGGFNSAVGVQGSEMLHSMLAAATPEQQKQILGEHLYPLVQKLKPSLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHPNYLSAEVAVN 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2284 635 SMART poly_2 550 613 IPR002004 GO:0003723
Bisa07g2284 635 Gene3D - 4 100 IPR012677 -
Bisa07g2284 635 SMART rrm1_1 295 367 IPR000504 GO:0003723
Bisa07g2284 635 SMART rrm1_1 101 173 IPR000504 GO:0003723
Bisa07g2284 635 SMART rrm1_1 192 264 IPR000504 GO:0003723
Bisa07g2284 635 SMART rrm1_1 13 86 IPR000504 GO:0003723
Bisa07g2284 635 SUPERFAMILY PABC (PABP) domain 542 621 IPR036053 GO:0003723
Bisa07g2284 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Bisa07g2284 635 FunFam Polyadenylate-binding protein 182 276 - -
Bisa07g2284 635 MobiDBLite consensus disorder prediction 492 528 - -
Bisa07g2284 635 Gene3D - 101 179 IPR012677 -
Bisa07g2284 635 Gene3D - 180 276 IPR012677 -
Bisa07g2284 635 Gene3D - 277 384 IPR012677 -
Bisa07g2284 635 Coils Coil 263 283 - -
Bisa07g2284 635 Gene3D - 536 626 - -
Bisa07g2284 635 SUPERFAMILY RNA-binding domain, RBD 292 384 IPR035979 GO:0003676
Bisa07g2284 635 MobiDBLite consensus disorder prediction 448 467 - -
Bisa07g2284 635 CDD RRM4_I_PABPs 293 371 - -
Bisa07g2284 635 SUPERFAMILY RNA-binding domain, RBD 11 96 IPR035979 GO:0003676
Bisa07g2284 635 CDD RRM2_I_PABPs 98 174 IPR045305 -
Bisa07g2284 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Bisa07g2284 635 FunFam Polyadenylate-binding protein 97 181 - -
Bisa07g2284 635 MobiDBLite consensus disorder prediction 492 510 - -
Bisa07g2284 635 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 611 IPR006515 GO:0003723
Bisa07g2284 635 PANTHER RNA BINDING PROTEIN 12 80 - -
Bisa07g2284 635 SMART rrm2_1 295 367 IPR003954 GO:0003676
Bisa07g2284 635 SMART rrm2_1 101 173 IPR003954 GO:0003676
Bisa07g2284 635 SMART rrm2_1 187 264 IPR003954 GO:0003676
Bisa07g2284 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Bisa07g2284 635 Pfam Poly-adenylate binding protein, unique domain 545 610 IPR002004 GO:0003723
Bisa07g2284 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Bisa07g2284 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Bisa07g2284 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Bisa07g2284 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Bisa07g2284 635 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 538 615 IPR002004 GO:0003723
Bisa07g2284 635 MobiDBLite consensus disorder prediction 445 467 - -
Bisa07g2284 635 SUPERFAMILY RNA-binding domain, RBD 101 272 IPR035979 GO:0003676
Bisa07g2284 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Bisa07g2284 635 FunFam Polyadenylate-binding protein 277 385 - -
Bisa07g2284 635 FunFam Polyadenylate-binding protein 4 96 - -
Bisa07g2284 635 FunFam Polyadenylate-binding protein 536 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2284 Bisa-ChrBisa07 52355545 52360404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2284 12 633 Eukaryotic Initiation Factors Gene Family AT2G36660 52.791 0.0 627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0911 03 12148972 12153507 Bisa07g2284 07 52355545 52360404 CCT
Bisa07g2284 07 52355545 52360404 Bisa07g2284 07 52355545 52360404 ECH