Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2275 ATGAGTTTGGGAAAGGAAAGAGTTGAGATAGTGAGATTGAAGGAACGAGGCATGAATATAGGCGCTGATTCGCGCGCTGGGTTCAAACAGGTGATGATGCAAGACATGGAATCAACCACTGTTTTGGAGAGGCAGTCTCATGATCATTGCGAGGCATCCGTGCCAACTCCGGCTTCAGAAACTCAAGCCGGGGCTTACTCCCAGACGATGCTTAGTATGCAGGTTTCTGAGAATAGCAGCTCTAAGATAGTTAGAGATTCTGTAGTGGATGGTTATATTGTTTACACCCGAGTAAAGAAGTCTCGGCTGTTGTGTGATGCGTCTTCTGAGAATGGGAAGGTTAAGAGATTCAAGACCTCTGAAGAACTGCAAGCAAATGTGCACCTTATAGTGGCGGATGTTGAAGGCGATGTAGAGGTAGACAATGCAGGAAATAAAATGGAAATTGGAGCCGACTGCAGTATGGAAAAGAATAAAAGCGGCAACAAGCTAGAGAGCGAGCCCGTTCAGTGTCTTGCGGGCGAAGGTGGCTTCAATGAGGTTCCTGTAGTGATTTCTATCAATGGCGATGTACAGAAAGATGTTGTAGACAAGACATTGAAGCGGTATACTCGATCAGCATTGAAAAGAAAGGTTCACTCCTTTGATAAGGCGGGAAATGTGTCAGAAGCTAAATCAGAGGGTAAGGTGAACGCTGCTGCTAGCCCATTAACAACCCCAAGAAACAAGTTGGAATTAAAGATGTCGAAAAAGATAGTGCTGAACAAGAAGCCTATGACCGTGAAGGAGCTCTTCGATACTGGCTTACTGGATGGGGTTTCAGTAATTTACATGGGCGGCAAAAAGGCTTCGGGACTGCGAGGCACTATTAAAGATGGGGGAATATTGTGTTCATGCTCACTGTGCAATGGACGCAGGGTCATTCCACCTTCCCAATTCGAGATTCATGCATGTAAAACGTATAGGCGAGCAGCACAATACATTTGCCTGGAAAATGGGAAGAGCCTACTTGAGCTTTTGAGAGCATGCAGGGGAGCTCCCTTACATGCACTAGAGGCGACGATTCAAAGCGTTGTTAGTTCTCCATATGAAGAAAAATATTTTACTTGTAAAATGTGCAAGGTATGTTTCCATCCTTCTTGTGTGGAAAGAGTAGGGTCTATATGCAATTCTTGCAAGGAATCCAAGGAAACTGTAGACAGTTCTATTGATGCAGTTGGCAAAAGAGTCAGGTCCCCTCGACCAGTATCTATCTCTAAGCAATGCAGTACTTCCGAGCGGTGTATCGCTTCACAGATTAAGAGACAATGGAAGAAAAGAACAAAGTCATCAAAATGGGTTAGCCGCTCAAAGTCTTCCAAAAATTCTTCAGTGCCTATCCTATCGCGAAAGAAGGGTCTTTGGAGGATGAAAAAGAAGTCATCAAAATTGTCAGTAAAATTGAAGACTCCAAGAACTACTTCAAATTCAAAGTGTTTATCTTCACCAAATAAGAGTCATTGGAGGATCACTAAAAAGCATCAGCAGTTGCATAAGTTAGTTTTTGAGGAAGGTGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCTCGTGGACAGAAACTGCTTGAGGGTTACAAAAAGGGCTTCGGAATACTTTGTCGATGCTGCAACTCTGAGGTCAGTCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCCCGCAAGAAACCTTATGCATACATCTACACATCAAATGGGGTGTCTCTCCATGAGTTAGCTATATCTCTCTCAAAAGGTCGCAAATACTCTGCAAAGGATAATGATGATCTATGCATTATTTGTTGGGATGGTGGAGATCTGTTGCTTTGTGATGGATGCCCTAGGGCATTTCATAAAGAATGTGCATCTCTGTCGAGTATTCCGCGTGGTGACTGGTATTGTAAGTTTTGCCAAAACATGTTCCAAAGAGAAAAGTTTGTGGCACACAATGTCAATGCTGTTGCAGCTGGAAGGGTTGAAGGGGTTGATCCTATTGAGCAGATAACCAAGAGATGTATACGCATTGTTGAAGACATTGATGCTGAACTTAGTGGATGTGCTTTATGCAGGGGTTGTGACTTTAGCAGATCAGGATTTGGTCCGCGAACAATAATACTCTGTGATCAGTGTGAAAAGGAATATCACGTTGGCTGCTTGAGGGATCATAAAATGGCATATTTGAAGGAATTGCCAAAAGGGGATTGGTTTTGTTGTCAGGATTGCTCAAAAATACATTCTACTCTTCAGAACCTCCTGGTTAGGGAGGCTGAGAAACTCCCAGAACCTCTCTTGGATGTTATAAACAAGAAGCAAGTGGAAAAAGGTTTAGGATCCCTCAGTAATATTGATGTGAGATGGAGGCTTCTGAAGGGCAAAATTGCTTCTTCTGAAACTAGGCCATTTCTTTTGCAGGCTATCTCAATCTTTCATGAATGCTTTGATCCTATAGTTGATTCAATTAGTGGACGCAACCTTATTACAGCCATGGTTTATGGAAGGAAGGTGCGGAATCAAGAGTTTAGAGCAATGCATTGTGCAATATTAATGGTCAATTCGACTGTGGTATCCGCTGCCTTGCTTCGAATTCATAATGGAGATGTTGCAGAACTCCCTCTAGTTGCAACTAGAAGTGGAAACCATGGAAAGGGTTACTTCCAATTACTATTCTCCTGCATTGAGGAACTGCTGACTTCTTTGAACGTGAAGAACCTTCTGCTACCGGCTGCTGAAGAAGCAGTGTCCATATGGACAGAGAAATTTGGGTTCAAAAAGATGAAACCAGAGGAGCTTATCAACTACAGGAAGAAAAGCTATCAGATTGTGATTTTCCAAGGAACGTCCATGCTTCATAAAATGGTCACTCATGTCCAGTAA 2895 0.4314 MSLGKERVEIVRLKERGMNIGADSRAGFKQVMMQDMESTTVLERQSHDHCEASVPTPASETQAGAYSQTMLSMQVSENSSSKIVRDSVVDGYIVYTRVKKSRLLCDASSENGKVKRFKTSEELQANVHLIVADVEGDVEVDNAGNKMEIGADCSMEKNKSGNKLESEPVQCLAGEGGFNEVPVVISINGDVQKDVVDKTLKRYTRSALKRKVHSFDKAGNVSEAKSEGKVNAAASPLTTPRNKLELKMSKKIVLNKKPMTVKELFDTGLLDGVSVIYMGGKKASGLRGTIKDGGILCSCSLCNGRRVIPPSQFEIHACKTYRRAAQYICLENGKSLLELLRACRGAPLHALEATIQSVVSSPYEEKYFTCKMCKVCFHPSCVERVGSICNSCKESKETVDSSIDAVGKRVRSPRPVSISKQCSTSERCIASQIKRQWKKRTKSSKWVSRSKSSKNSSVPILSRKKGLWRMKKKSSKLSVKLKTPRTTSNSKCLSSPNKSHWRITKKHQQLHKLVFEEGGLPDGTEVAYYARGQKLLEGYKKGFGILCRCCNSEVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICWDGGDLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNMFQREKFVAHNVNAVAAGRVEGVDPIEQITKRCIRIVEDIDAELSGCALCRGCDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPKGDWFCCQDCSKIHSTLQNLLVREAEKLPEPLLDVINKKQVEKGLGSLSNIDVRWRLLKGKIASSETRPFLLQAISIFHECFDPIVDSISGRNLITAMVYGRKVRNQEFRAMHCAILMVNSTVVSAALLRIHNGDVAELPLVATRSGNHGKGYFQLLFSCIEELLTSLNVKNLLLPAAEEAVSIWTEKFGFKKMKPEELINYRKKSYQIVIFQGTSMLHKMVTHVQ 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2275 964 Pfam Tify domain binding domain 288 343 IPR032308 -
Bisa07g2275 964 Pfam Tify domain binding domain 538 588 IPR032308 -
Bisa07g2275 964 SMART PHD_3 342 393 IPR001965 -
Bisa07g2275 964 SMART PHD_3 604 645 IPR001965 -
Bisa07g2275 964 SMART PHD_3 692 749 IPR001965 -
Bisa07g2275 964 ProSiteProfiles Zinc finger PHD-type profile. 602 647 IPR019787 -
Bisa07g2275 964 ProSitePatterns Zinc finger PHD-type signature. 605 644 IPR019786 -
Bisa07g2275 964 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 591 678 IPR013083 -
Bisa07g2275 964 Gene3D - 795 963 - -
Bisa07g2275 964 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 591 668 - -
Bisa07g2275 964 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 689 751 IPR013083 -
Bisa07g2275 964 SUPERFAMILY FYVE/PHD zinc finger 593 650 IPR011011 -
Bisa07g2275 964 Pfam PHD-finger 605 646 IPR019787 -
Bisa07g2275 964 PANTHER AUTOIMMUNE REGULATOR 113 959 - -
Bisa07g2275 964 SUPERFAMILY FYVE/PHD zinc finger 687 747 IPR011011 -
Bisa07g2275 964 CDD PHD1_AIRE 604 644 - -
Bisa07g2275 964 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 848 938 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2275 Bisa-ChrBisa07 52140891 52150665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2275 79 964 PHD Transcription Factor Family AT2G36720 45.772 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa07g2275 TDBD 2.2e-13 No_clan