Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2254 ATGCACACCCCAGAGCAAGTGGTGGCGACCTTCAACAAGGATCAGGCTCACGTCATGAAGGGCAAGCGAACCAAGCGTCCGAGGCTACCCCTACCCTTGCCTTCAACCACTTCATCGGTTGATCTCGCTAACTCCTCATCGCCGGCCACCACGTCGTCATCACCTGAACTCAGAGATATCAGTAGTAGAGAGGAAGAGGAGGACATGGCTCAATGTTTGATTCTTCTAGCTCGAGGGCATGCCGGGAAAATACCCTCGTCAATATCACACGCTAAGGACGAGACATATGTTTACCAGTGCAAGACATGTGACCGATGCTTCCCTTCATTCCAAGCGCTTGGTGGACACAGGGCTAGCCACAAGAAAATCAAGCCCACTTTAGAAGAAAAGCCGCAGGTTGGTGTTGGCCATGACTACGACGCCGTTTCCTTGCAATTATCAAGCACGGCTTTGTGCAATAATAATTATAGCAGTGGCAGCATTAGTAATAATAATAATAAATCCAGAGTTCACGAGTGTGCGATATGTGGGGCAGAGTTCTCCTCTGGCCAAGCCTTGGGGGGTCATATGAGAAGGCATAGGAATTTCGTGAACGCCTCTGCGACTGCTTCCACCAGCACTTGTGAATCCCTTGAAGCCAAGAAACCCAGAAACGTGTTGAAGTTGGACTTGAATCTACCCGCACCTGAACATGATCATCACGACCACACAGATTCCAGCTTTCCCTTTCACTCCAAAGACGTCAATCTTCTCGTCTTCTCTGCATCTCCTTTGGTCCATTGCCATTACTAA 792 0.4924 MHTPEQVVATFNKDQAHVMKGKRTKRPRLPLPLPSTTSSVDLANSSSPATTSSSPELRDISSREEEEDMAQCLILLARGHAGKIPSSISHAKDETYVYQCKTCDRCFPSFQALGGHRASHKKIKPTLEEKPQVGVGHDYDAVSLQLSSTALCNNNYSSGSISNNNNKSRVHECAICGAEFSSGQALGGHMRRHRNFVNASATASTSTCESLEAKKPRNVLKLDLNLPAPEHDHHDHTDSSFPFHSKDVNLLVFSASPLVHCHY 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2254 263 SMART c2h2final6 171 193 IPR013087 -
Bisa07g2254 263 SMART c2h2final6 98 120 IPR013087 -
Bisa07g2254 263 MobiDBLite consensus disorder prediction 31 57 - -
Bisa07g2254 263 SUPERFAMILY beta-beta-alpha zinc fingers 97 193 IPR036236 -
Bisa07g2254 263 Pfam C2H2-type zinc finger 170 194 - -
Bisa07g2254 263 Pfam C2H2-type zinc finger 97 122 - -
Bisa07g2254 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 193 IPR013087 -
Bisa07g2254 263 MobiDBLite consensus disorder prediction 1 64 - -
Bisa07g2254 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Bisa07g2254 263 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Bisa07g2254 263 Gene3D Classic Zinc Finger 95 193 - -
Bisa07g2254 263 PANTHER ZINC FINGER PROTEIN ZAT5 28 235 - -
Bisa07g2254 263 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2254 Bisa-ChrBisa07 51688625 51689416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2254 14 263 C2H2 Transcription Factor Family AT2G28200 40.614 2.71e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa07g2254 zf-C2H2_6 6.4e-10 CL0361