Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2221 ATGGGCCACCTTCTAAATCTACCCCATGGAACAGCCTTCTTAAACAAATTAAGTTTCCATGACTGCCCCAAGTGGCTCCAACAAAGGACATGTCGTTATACTGGAAAATTCGCCAAGTTTCATATATGTAATGGTGCTCTGTTAGCTTTTCACGGTGGTGCGGAGTTAGCACGTCATGTCAAGAGTTCATTTAACTACTCGATTAACACTCATAATGGAGGAAAGTTAAATGCCTTTCCTCATGTACAAACTCTCAGAGAATTTCCTAAGGAGGAACTTTCTACAAAAGTTGTCATGGTCAGATTTGATTCTAACATTTTGATTAAGCAACAGTGCAAGCAACAGACCCAGTCAGCTTGTAATGCATTGCTTACAATTAAATATTTATATGAAGCTGGGGCAAAAGTAATTCTGGTCAGTGATTGGGATATAAATAATTCACAACTTCGTCATACAGGTCCTATTGCAGATTTCTTGTCAGCAGTTCTTGAGATACAAATTGTTCCACTACAACACATATCTTGTAATAAGCTATTGAAGGTGGAAGGCCCCAAGAAAGCAGATATCTTCCTTGTTGAGAATCTTTCTAATTTTAAAGAGGAAGTTGCCAATTGTTCAGAGTTTGCTAGAGAATTATCATCAGGAGTTGATATCTTTGTTAATGACTCCTTCTCACTCTCTCATAAAGTTCTAGCATCAACTGTTGGTGTCACTCGCTTCTGCTATGCCTGTGTGGCTGGTTTTCACTTTGAGGAAAGCCTAGGTCTACTGAAGAAGGTTGCAGATGTCACCAAGAAACCCTATGTTGCAATCATTGGAGGGACTAATTTCTATGATAAAGCAGCTGCTTTGCGTTTTCTAGCTTCCAGATGCGAGGGGTTGGTGTTTGTTGGAATGATGTCATTTCAAATAATGCACGCGTTAGGAGTTTCAGTTCCTCCGAACCTTGTGGAGCATAAGGCGTGCGATGAAGCTTCAGATATAGTGCAACTTGCTCAAGAGAGAAATCTACAGATTTTGTATCCAAAAGATTTTTGGTGCAGGAATCAATGCAATCCAAAGCAATTGCAAGCATATCCTTTACACAGCATTTTGGATGGCTGGGTACCTGTTGACCTTGGACCTGCATCACTAGATGAAATAGGCTCCTTGCTTGCACTGTCTAAGTTGAGTTCCTTTTCTGTTATAAGTATGATTGAAAATGCTTCAGTTGTATGGGAATTTCTCAAAGGAAGAAAGCTCCCTGGTGTTGTGGCCTTAGACAGAGCGTACCCATTTGAGATCAGCTGGAACAACATGTATTCTGACCCGGCTCAACCTCTGGTTGTTGATATAGGAAGTGGTAATGGCCTTTTTCTTCTGGAAATGGCTCGAAGGAGGAAAGAATTGAACTTCCTCGGTTTGGAGATTAATGAAAAGCTTGTGAGGCGCTGTTTGGATTCTGTTCATCAGTTTGGCATGCAGAATGGGTACTTCATTGCAACTAATGCAACATCAACATTCCGTTCCATCGTTTCTACTTACCCAGGAGAGTTGATTCTTGTTTCAATACAGTGTCCAAATCCTGACTTCAATAAGCCTGAGCATAGATGGAGGATGCTGCAGAGATCTTTAATTGAAGCTATAACGGATCTCCTTACATCCGATGGGAAGGTTTTTCTGCAATCCGACGTAGAAGACGTTGCTATAAGAATGAAAGAACAGTTTTTGAGATATGGCAAGGGTAAGCTTAGTTTGGTGCATGACCTAGGCAATGGCCGCTGTAGTTGGCTTGTGGAAAACCCATTTGGGGTTAGGTCAGACTGGGAGCGACACATTTTTCAATCTTTGCACTTGCACTGCGAAGACCTTCTTCTCTCTACCAGCCTCCACTCGTCTTGCTGTTCTTCGACCATGGCTAACCAGGCTGAATCCTCAGATTCTAAGGGAACAAAGAGGGACTACAGCACGGCGATTTTGGAGCGCAAGAAGGCGCCAAATCGGCTGGTTGTTGATGAGGCCATCAACGACGACAACTCCGTCGTCGCACTTCACCCAGAGACAATGGAAAAACTTCAACTGTTTCGCGGCGACACGATTTTGATTAAGGGTAAGAAAAGGAGAGATACAATCTGTATCGCACTTGCTGATGACACATGTGATGAACCAAAGATAAGAATGAACAAGGTTGTGAGAAACAACCTGAGGGTTAGGCTTGGAGATGTTGTTTCTGTGCATCAGTGTGCTGATGTCAAGTATGGAAAGCGAGTCCACATTCTTCCCGTGGATGACACTATTGAAGGGGTAACTGGAAATCTCTTTGATGCTTACTTAAAACCTTATTTTCTGGAGTCATATCGCCCAGTGCGGAAGGGTGACTTATTTCTTGTGAGAGGGGGGATGAGAAGTGTAGAATTCAAGGTTATTGAAACTGACCCTTCTGAGTATTGTGTTGTTGCACCAGACACAGAGATCTTTTGTGAAGGAGAGCCTGTGAAAAGAGAAGATGAGAACCGATTAGATGAGGTTGGTTATGATGATGTTGGGGGTGTAAGAAAGCAGATGGCCCAGATTAGGGAATTGGTGGAACTGCCACTGAGGCATCCACAGTTATTTAAGTCTATTGGTGTTAAGCCGCCCAAGGGAATTTTGCTGTATGGGCCTCCCGGGTCTGGTAAGACTTTAATTGCCCGAGCAGTTGCAAATGAAACTGGTGCCTTCTTTTTCTGCATCAATGGACCAGAGATCATGTCAAAACTGGCTGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAGGAAGCTGAAAAAAATGCACCATCTATCATCTTTATTGATGAGATAGATTCAATAGCTCCTAAGCGGGAGAAAACTCATGGAGAAGTTGAGAGGAGGATTGTTTCCCAGCTATTGACACTCATGGATGGGCTAAAATCACGTGCACATGTAATTGTTATTGGAGCCACAAATCGTCCCAACAGCATTGACCCTGCTCTTAGGAGGTTTGGAAGGTTTGATCGGGAAATAGATATTGGTGTTCCAGATGAAGTTGGCCGTCTAGAGGTGCTACGTATCCACACAAAGAATATGAAGCTTGCAGAAGATGTTGATTTGGAAAAAATTTCCAAGAATACTCATGGATATGTTGGTGCTGATCTTGCTGCTTTGTGTACTGAAGCTGCACTTCAATGCATCAGAGAGAAGATGGATGTGATTGACTTAGAAGATGAGACAATTGATGCTGAGATACTGAACTCAATGGCTGTGACAAATGAGCATTTCGAGACTGCTCTTGGATCAAGCAATCCTTCTGCACTCCGTGAAACAGTTGTTGAAGTGCCCAATGTCAGCTGGGATGATATTGGTGGCCTTGAGAATGTTAAGAGAGAACTCCAAGAGACTGTTCAGTATCCAGTGGAACACCCTGAAAAATTCGAGAAGTTTGGAATGTCCCCATCAAAGGGTGTTCTTTTCTATGGTCCTCCTGGATGTGGTAAGACACTTTTGGCTAAGGCTATTGCCAATGAATGCCAGGCGAACTTCATCAGTGTTAAAGGTCCTGAGCTACTTACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGCGGGAGATATTTGACAAGGCCCGTGGTTCTGCTCCATGTGTTCTGTTCTTTGATGAACTTGACTCAATTGCAACTCAGAGGGGTAGTAGTGTAGGAGATGCTGGCGGTGCTGCTGACAGGGTTTTGAACCAACTCCTTACAGAAATGGATGGGATGTCAGCTAAGAAAACTGTGTTCATCATTGGGGCTACCAATCGACCAGACATTATAGACCCTGCTCTTCTGCGCCCTGGCCGTCTAGACCAGTTGATCTATATCCCCCTCCCGGATGAGGAATCCCGTTATCAAATATTTAAATCCTGCTTGAGAAAATCCCCTGTTGCAAAGGATGTTGATCTCGGAGCTCTAGCCAAGTATACTCAAGGCTTTAGTGGTGCTGATATTACTGAGATTTGCCAGCGCGCATGCAAGTATGCTATAAGAGAGAACATTGAAAAGGACATTGAGAGAGAACGGAGGAGAAGGGATAATCCTGAGGCCATGGAGGAAGATGTTGAAGATGACGTAGCAGAAATCAAGGCAGCTCATTTTGAGGAATCGATGAAGTACGCACGAAGGAGTGTAAGTGATGCCGATATTCGCAAGTACCAGGCATTTGCCCAAACATTACAGCAGTCTAGAGGATTTGGATCCGAGTTCAGGTTTACAGACAGTAGCTCTGGTGCTGCTGCTGCCTCAGCTGACCCTTTTGCAACTGCTGCAGCTGACGATGATGATCTTTACAGTTAG 4311 0.4359 MGHLLNLPHGTAFLNKLSFHDCPKWLQQRTCRYTGKFAKFHICNGALLAFHGGAELARHVKSSFNYSINTHNGGKLNAFPHVQTLREFPKEELSTKVVMVRFDSNILIKQQCKQQTQSACNALLTIKYLYEAGAKVILVSDWDINNSQLRHTGPIADFLSAVLEIQIVPLQHISCNKLLKVEGPKKADIFLVENLSNFKEEVANCSEFARELSSGVDIFVNDSFSLSHKVLASTVGVTRFCYACVAGFHFEESLGLLKKVADVTKKPYVAIIGGTNFYDKAAALRFLASRCEGLVFVGMMSFQIMHALGVSVPPNLVEHKACDEASDIVQLAQERNLQILYPKDFWCRNQCNPKQLQAYPLHSILDGWVPVDLGPASLDEIGSLLALSKLSSFSVISMIENASVVWEFLKGRKLPGVVALDRAYPFEISWNNMYSDPAQPLVVDIGSGNGLFLLEMARRRKELNFLGLEINEKLVRRCLDSVHQFGMQNGYFIATNATSTFRSIVSTYPGELILVSIQCPNPDFNKPEHRWRMLQRSLIEAITDLLTSDGKVFLQSDVEDVAIRMKEQFLRYGKGKLSLVHDLGNGRCSWLVENPFGVRSDWERHIFQSLHLHCEDLLLSTSLHSSCCSSTMANQAESSDSKGTKRDYSTAILERKKAPNRLVVDEAINDDNSVVALHPETMEKLQLFRGDTILIKGKKRRDTICIALADDTCDEPKIRMNKVVRNNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPSEYCVVAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKISKNTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFETALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLGALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMEEDVEDDVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFTDSSSGAAAASADPFATAAADDDDLYS 1436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2221 1436 Gene3D - 258 406 IPR015824 GO:0004618|GO:0006096
Bisa07g2221 1436 Gene3D - 1099 1282 IPR027417 -
Bisa07g2221 1436 SUPERFAMILY Phosphoglycerate kinase 90 421 IPR036043 GO:0004618|GO:0006096
Bisa07g2221 1436 Gene3D - 638 743 - -
Bisa07g2221 1436 FunFam Transitional endoplasmic reticulum ATPase 638 743 - -
Bisa07g2221 1436 Pfam Cell division protein 48 (CDC48), domain 2 763 826 IPR004201 -
Bisa07g2221 1436 SMART CDC48_N_2 661 744 IPR003338 -
Bisa07g2221 1436 FunFam Cell division control 48 744 840 - -
Bisa07g2221 1436 SMART CDC48_2_2 761 827 IPR004201 -
Bisa07g2221 1436 Gene3D - 1007 1098 - -
Bisa07g2221 1436 FunFam Phosphoglycerate kinase 419 617 - -
Bisa07g2221 1436 FunFam Transitional endoplasmic reticulum ATPase 837 1005 - -
Bisa07g2221 1436 ProSitePatterns AAA-protein family signature. 1252 1270 IPR003960 GO:0005524|GO:0016887
Bisa07g2221 1436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 835 1097 IPR027417 -
Bisa07g2221 1436 PANTHER AAA-FAMILY ATPASE 653 1400 - -
Bisa07g2221 1436 SUPERFAMILY Cdc48 domain 2-like 743 835 IPR029067 -
Bisa07g2221 1436 PRINTS Phosphoglycerate kinase family signature 269 288 IPR001576 GO:0004618|GO:0006096
Bisa07g2221 1436 PRINTS Phosphoglycerate kinase family signature 92 108 IPR001576 GO:0004618|GO:0006096
Bisa07g2221 1436 PRINTS Phosphoglycerate kinase family signature 215 237 IPR001576 GO:0004618|GO:0006096
Bisa07g2221 1436 PRINTS Phosphoglycerate kinase family signature 187 202 IPR001576 GO:0004618|GO:0006096
Bisa07g2221 1436 PRINTS Phosphoglycerate kinase family signature 246 268 IPR001576 GO:0004618|GO:0006096
Bisa07g2221 1436 PRINTS Phosphoglycerate kinase family signature 113 135 IPR001576 GO:0004618|GO:0006096
Bisa07g2221 1436 Pfam ATPase family associated with various cellular activities (AAA) 876 1005 IPR003959 GO:0005524|GO:0016887
Bisa07g2221 1436 Pfam ATPase family associated with various cellular activities (AAA) 1149 1282 IPR003959 GO:0005524|GO:0016887
Bisa07g2221 1436 FunFam Cell division control 48 1007 1098 - -
Bisa07g2221 1436 Pfam Phosphoglycerate kinase 92 386 IPR001576 GO:0004618|GO:0006096
Bisa07g2221 1436 Pfam Cell division protein 48 (CDC48), N-terminal domain 661 742 IPR003338 -
Bisa07g2221 1436 Pfam AAA+ lid domain 1304 1344 IPR041569 -
Bisa07g2221 1436 Pfam AAA+ lid domain 1028 1070 IPR041569 -
Bisa07g2221 1436 SMART AAA_5 872 1008 IPR003593 GO:0016887
Bisa07g2221 1436 SMART AAA_5 1145 1284 IPR003593 GO:0016887
Bisa07g2221 1436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1107 1395 IPR027417 -
Bisa07g2221 1436 Gene3D Vaccinia Virus protein VP39 413 614 IPR029063 -
Bisa07g2221 1436 Pfam Putative methyltransferase 439 572 IPR003358 GO:0006400|GO:0008176
Bisa07g2221 1436 CDD RecA-like_CDC48_r1-like 840 1005 - -
Bisa07g2221 1436 ProSitePatterns AAA-protein family signature. 976 994 IPR003960 GO:0005524|GO:0016887
Bisa07g2221 1436 ProSiteProfiles SAM-dependent methyltransferase TRMB-type domain profile. 393 621 IPR003358 GO:0006400|GO:0008176
Bisa07g2221 1436 Gene3D - 78 257 IPR015824 GO:0004618|GO:0006096
Bisa07g2221 1436 Gene3D - 841 1005 IPR027417 -
Bisa07g2221 1436 FunFam Transitional endoplasmic reticulum ATPase 1099 1282 - -
Bisa07g2221 1436 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 437 576 IPR029063 -
Bisa07g2221 1436 Gene3D - 1286 1394 - -
Bisa07g2221 1436 SUPERFAMILY ADC-like 658 741 IPR009010 -
Bisa07g2221 1436 CDD AdoMet_MTases 442 555 - -
Bisa07g2221 1436 CDD RecA-like_CDC48_r2-like 1120 1280 - -
Bisa07g2221 1436 NCBIfam CDC48 family AAA ATPase 662 1398 IPR005938 GO:0016787
Bisa07g2221 1436 Gene3D - 744 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2221 Bisa-ChrBisa07 51156961 51171899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2221 1078 1341 Calmodulin-binding Proteins AT3G56690 48.106 2.13e-76 273