Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2204 ATGAGTTGGATCTCACAAGCCCTCTTTTTCTGCTTCGAAGCCTTATCTGTTCGTAGTGCAAAAACCATGTCTACCTCTGCGGCTTCCTTAGCTCTTCCTTCTTTTACATCTAGATCCCAATCGCAATGCTCGGCGAGACAAGCGTTGTTCTCTCCCCATTCTATGTCTTCGGTGTCTCTAGGGCTTAACTGGAAGGCTATATCTGTATCTGCTTCGTTTCTTCAATTGCACACTCCTCGTCACTCCTTGTCGTCTCGTTTCGTCCGGAGCGTTGCCATTTCTCCTGAGTTCGACCAAGACGAGATTCAGAGTGATGGAGACGAGCCCAGCTACTCTCCCGACCTCAAGCTCTTTGTGGGTAATCTTCCTTTCAGCGCTGACAGCGCCCAACTGGCTGAGCTGTTCGAGAGCGCTGGAAGTGTAGAGATGGTTGAGGTAATTTATGATAAAATGACTGGAAGAAGCAGGGGATTCGGTTTTGTTACCATGTCTACCACTGAGGAAGTTAAAGCAGCCGCTGAACAGTTCAATGGCTATGAACTAGATGGAAGGGCATTGAGAGTAAATTTTGGACCTCCTCCTCGGAAAGAGAGTTCCCCTTTTAGAGGTGTCAGAGGTGGTTCTTTTTCAGATAGTGGAAACCGGGTTCACGTAGGTAATCTTGCATGGGGTGTTGATAACTTTGCGCTTGAATCATTGTTTGGTGAGCAAGGAAAGGTTTTGGAAGCAAAGGTAATTTATGACAGGGAAAGTGGAAGATCAAGAGGATTTGGATTTGTGACTTATAGTAGTGCCGAAGAGGTCAACAGTGCTATTGAGTCCTTGAATGGTGTGGACTTGAATGGCAGAGCTATTCGAGTATCATTAGCAGATGCTAAGCCAAAGCGACAATTTTGA 897 0.4627 MSWISQALFFCFEALSVRSAKTMSTSAASLALPSFTSRSQSQCSARQALFSPHSMSSVSLGLNWKAISVSASFLQLHTPRHSLSSRFVRSVAISPEFDQDEIQSDGDEPSYSPDLKLFVGNLPFSADSAQLAELFESAGSVEMVEVIYDKMTGRSRGFGFVTMSTTEEVKAAAEQFNGYELDGRALRVNFGPPPRKESSPFRGVRGGSFSDSGNRVHVGNLAWGVDNFALESLFGEQGKVLEAKVIYDRESGRSRGFGFVTYSSAEEVNSAIESLNGVDLNGRAIRVSLADAKPKRQF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2204 298 SUPERFAMILY RNA-binding domain, RBD 211 297 IPR035979 GO:0003676
Bisa07g2204 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 193 IPR000504 GO:0003723
Bisa07g2204 298 SUPERFAMILY RNA-binding domain, RBD 108 214 IPR035979 GO:0003676
Bisa07g2204 298 CDD RRM2_NsCP33_like 215 290 - -
Bisa07g2204 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 286 IPR000504 GO:0003723
Bisa07g2204 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 187 IPR000504 GO:0003723
Bisa07g2204 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Bisa07g2204 298 SMART rrm1_1 215 288 IPR000504 GO:0003723
Bisa07g2204 298 SMART rrm1_1 116 189 IPR000504 GO:0003723
Bisa07g2204 298 Gene3D - 212 298 IPR012677 -
Bisa07g2204 298 Gene3D - 95 211 IPR012677 -
Bisa07g2204 298 PANTHER OS02G0815200 PROTEIN 29 295 - -
Bisa07g2204 298 FunFam 28 kDa ribonucleoprotein, chloroplastic 206 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2204 Bisa-ChrBisa07 50994939 50997090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2204 117 297 Eukaryotic Initiation Factors Gene Family AT1G49760 27.419 1.68e-12 65.9