Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2183 ATGGGTCATAGACATTTGTATAGCACATCTCAAATGTTTGAGAGTGAGCAAGACCAAAATTGGAATGCAATGCATACTGATCAACATTATGTGCACCTTGGTAGAGCAAGCACTTCAGACAATGGTTCTTTCATTTATCCTGTGGAAAATATGTCGGTAGATGGCGTTTCTTTTGCCTCCAATTGGAACTCTACTGCAAGGTCAAGTGGATTTGCATCCTCAAGTCTCAATATTGAAGTACCCCCTCATCAATCAGACGTATCAGGAACTTCTCATGACCATTTTCTGCATTCATCAAATGCCGGAGCCTTCTTTGCAGTTTCTGAAAATTATACTCACCAGCCTTCTTCTTCTTCCAATTATGAGAGACAGGCATTTCATGTTGTTGATGGTGGTTTTATTGATCTTACAATGGGAAGTGGAAGAGGGCCTCAGAAACGCAAGAGCCCTGGAATTCCGCCAGTCTGTGAGAGAGGCAGTACGAGCAGATACTTTAATGCTGGAAGTTCAACTGAACTTCCTATGTCTTCAGAAATGCGGCAGGAAAAGCCAAGTATGGATTCTCAGTTTGTGCTTTGGGATCAAGTTACCATGCCACCCTCCTTCAGAGGTAGTGGCCTTTCCATCAGGGGTGAGGGTTCCCTGAGAAATGTGAGAAGCCGTTCTGCACATGACTTTGAATCCAACATGGCTAGGACCCATTTATCCAGCAATCATTCACACAACTACTCTACTGGTCCTCCCATCAACCATTCTAGCACAGTGGATCTCTCAGGTCAGAGTTCTAGCACATTAACAAGGGATTGGAGCCAAATGAGCATCTCTACTGTACATGGCAGGGTGTTACTACCAGATACAAGTGCTCTTAATAGTGAGACAAATCACCTCCTTGTTGGAACTAGTACTAGTAATGCCTCTGTAGATGTTGGGAGTTATCATCATGACTTTGGTACAAGCAGAAATCCTATTGTTCCTCAAAGTTTCCACAATAATCTCACTCAGACTGCTAGGGGAGTTCGCAGTACCTTTTCACAAAGATCTACTCCACCATTTAGGACTTCTTCTAGCTTGCGCTTAGGACATGTGACACCTTCAGATGATGCATTGCAAATGGTTGCTGAAAGTTACCCCTCAAGACATCCAAGGCCATTAACAACCATTGGCTGGCGGAATGGTGACAGAAATGGGAGGTCAAGGATATCTAGTGATAGATATCGACCATTGGCTGATGCAGCTAGTCTCCACGATCGATTTTCCTCTGAGGGTTTCATGACTGTTGATCGTGGGATACCACATGGTTCTGGAAGTATGGTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGCTATGAGGAACTACTTGCACTTGGAGAGAGGATTGGCAGTGTCAGCACAGGATTGTCTGAGGATTTGATTTCAAAATGTTTGACAGAAACAATATATTGTTCATCCGAGCAAAGTCAGGAGGAAGAAACTTGTGTAATCTGTTTGGAAGAGTACAAGAACATGGACGATGTCGGAACGCTGAAAACTTGCCATCACGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCAGTGAAGAACAAATGCCCTATCTGCAAAGCTTCTGCTTTGCCTGATGATTTGAAGGATAAATAA 1650 0.4345 MGHRHLYSTSQMFESEQDQNWNAMHTDQHYVHLGRASTSDNGSFIYPVENMSVDGVSFASNWNSTARSSGFASSSLNIEVPPHQSDVSGTSHDHFLHSSNAGAFFAVSENYTHQPSSSSNYERQAFHVVDGGFIDLTMGSGRGPQKRKSPGIPPVCERGSTSRYFNAGSSTELPMSSEMRQEKPSMDSQFVLWDQVTMPPSFRGSGLSIRGEGSLRNVRSRSAHDFESNMARTHLSSNHSHNYSTGPPINHSSTVDLSGQSSSTLTRDWSQMSISTVHGRVLLPDTSALNSETNHLLVGTSTSNASVDVGSYHHDFGTSRNPIVPQSFHNNLTQTARGVRSTFSQRSTPPFRTSSSLRLGHVTPSDDALQMVAESYPSRHPRPLTTIGWRNGDRNGRSRISSDRYRPLADAASLHDRFSSEGFMTVDRGIPHGSGSMVDQHRDMRMDIDNMSYEELLALGERIGSVSTGLSEDLISKCLTETIYCSSEQSQEEETCVICLEEYKNMDDVGTLKTCHHDYHVSCIRKWLSVKNKCPICKASALPDDLKDK 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2183 549 CDD RING-H2_RNF24-like 494 541 - -
Bisa07g2183 549 MobiDBLite consensus disorder prediction 236 262 - -
Bisa07g2183 549 SUPERFAMILY RING/U-box 485 542 - -
Bisa07g2183 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 91 542 IPR045191 GO:0061630
Bisa07g2183 549 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 461 542 - -
Bisa07g2183 549 SMART ring_2 496 537 IPR001841 -
Bisa07g2183 549 MobiDBLite consensus disorder prediction 138 179 - -
Bisa07g2183 549 ProSiteProfiles Zinc finger RING-type profile. 496 538 IPR001841 -
Bisa07g2183 549 MobiDBLite consensus disorder prediction 339 360 - -
Bisa07g2183 549 MobiDBLite consensus disorder prediction 162 179 - -
Bisa07g2183 549 Pfam Ring finger domain 495 538 IPR001841 -
Bisa07g2183 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 542 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2183 Bisa-ChrBisa07 50679805 50682532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2183 1 548 C3H Transcription Factor Family AT2G37150 41.176 3.86e-114 348