Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2170 ATGGCCAACGACTCCTCCTCTTTGTTCTCCGGCATTCGATTTGATAGAAAGAGGTTCGGCAGTGATATTGCTAAGTTCGAGAAAAAAGAAAGCGATCATTCAGTGAAGATTTCGAGCCCAGTTGAAATTGAGGAAGCAGAACCAGTTGAAGGTAAAGTGTCTGCGAAGAAGAGGAAGCGGAAGGGAGCGGTGTCAGAAACGGTTGACGGATTTAGTGTCTTTAAAAAATCAAAATCAACGAAACATCAAATAAAGGATGAAGATAAAGTTGTCAACGAGTCAGTTCAGCGGACGAAAGAACAAAATAGGCAACTTGAGCGGGACGCTCTCTTCAGGAAGAAGCATAACATTCATGTGTCTGGGTATAATGTCCCGTCCCCGCTTCAAAATTTTAATGAGTTGAGCTCAAGATATAAGTGTGAACCATACTTATTACGCAATCTGGCAGAACTTGGATTCAGAGAACCAACACCTATTCAAAGGCAGGCAATTCCTGTACTTCTACATGATCGCGAATGCTTTGCCTGTGCCCCTACTGGCTCTGGAAAAACGTTGGCATTTGTTTGTCCCATGCTTATGAAGCTTAAGGACCCATCAAAAGATGGCATTCGAGCTGTTATCCTTTGTCCTACTCGTGAACTATCTTCGCAAACATACAGAGAATGCAAAAAGATGGCTAAAGGAAAAAAATTCCGTATCAAGTTAATGACTAAAGAGCTAGCAAGAAATGGTGATTTTTCAAAATTTCCATGTGATATACTTATATCCACACCACTTCGATTACGCATGGCTATCCGGAAGAGAAAGGTTGATCTCAGCAGAGTAGAATATCTTGTCCTGGATGAATCTGATAAGCTATTTGAGCTTGGATTGTTGAAGCAGATTGATTCTATTATCAAAGCATGCTCAAATCCCTCAATTATACGCTCACTTTTCAGTGCTACTTTACCTGATCTTGTTGAGGATCGTGCTCGGGAACTTATGCATGATGCTGTTAGAGTTATTGTTGGCAGGAAGAATATGGCTTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTATAGCAATTCGCCAAAGTTTTGCAGAGAGTTTAAATCCTCCAGTACTGGTCTTCGTCCAAAGCAAGGAGCGAGCAAAGGAACTCTATGGTGAACTTAAATTTGACAACATTAGAGTTGACGTCATCCATTCTGATTTGTCTCAAAAGGAGCGAGAAGATGCTGTTGATCATTTCAGAGCTGGCAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCTCGAGGCATGGATTTCAAAGGCGTGAAGTGTGTGATTAACTATGATTTTCCAGATTCTGCTGCTGCTTACATTCACAGGATTGGTCGTTCGGGCAGAGCAGGGAGGGCTGGAGAAGCTATAACCTTTTATTCGGAGGAAGACATTCCATTCCTGCGTAATATAGCTACTCTGATGGCAGCTTCAGGTTGTGAAGTTCCTTCTTGGCTCTTGGAGTTACCCAAAAAGAAGTGGAAGAAGCACCGTCCCAAAAGAGAATCTATCTCAACCAAACCAAAAGTATAA 1581 0.4143 MANDSSSLFSGIRFDRKRFGSDIAKFEKKESDHSVKISSPVEIEEAEPVEGKVSAKKRKRKGAVSETVDGFSVFKKSKSTKHQIKDEDKVVNESVQRTKEQNRQLERDALFRKKHNIHVSGYNVPSPLQNFNELSSRYKCEPYLLRNLAELGFREPTPIQRQAIPVLLHDRECFACAPTGSGKTLAFVCPMLMKLKDPSKDGIRAVILCPTRELSSQTYRECKKMAKGKKFRIKLMTKELARNGDFSKFPCDILISTPLRLRMAIRKRKVDLSRVEYLVLDESDKLFELGLLKQIDSIIKACSNPSIIRSLFSATLPDLVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLIAIRQSFAESLNPPVLVFVQSKERAKELYGELKFDNIRVDVIHSDLSQKEREDAVDHFRAGKTWVLIATDVVARGMDFKGVKCVINYDFPDSAAAYIHRIGRSGRAGRAGEAITFYSEEDIPFLRNIATLMAASGCEVPSWLLELPKKKWKKHRPKRESISTKPKV 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2170 526 Gene3D - 342 523 IPR027417 -
Bisa07g2170 526 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 506 IPR001650 -
Bisa07g2170 526 MobiDBLite consensus disorder prediction 30 61 - -
Bisa07g2170 526 SMART helicmild6 386 467 IPR001650 -
Bisa07g2170 526 Gene3D - 108 341 IPR027417 -
Bisa07g2170 526 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 334 IPR014001 -
Bisa07g2170 526 SMART ultradead3 152 349 IPR014001 -
Bisa07g2170 526 CDD SF2_C_DEAD 346 476 - -
Bisa07g2170 526 Pfam Helicase conserved C-terminal domain 369 467 IPR001650 -
Bisa07g2170 526 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Bisa07g2170 526 Pfam DEAD/DEAH box helicase 157 321 IPR011545 GO:0003676|GO:0005524
Bisa07g2170 526 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 81 512 - -
Bisa07g2170 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 479 IPR027417 -
Bisa07g2170 526 CDD DEADc_DDX52 144 337 IPR044764 GO:0003724|GO:0005524|GO:0030490
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2170 Bisa-ChrBisa07 50538067 50544300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2170 127 505 Eukaryotic Initiation Factors Gene Family AT3G19760 32.021 2.89e-58 197