Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2065 ATGTTATCGTTGTTTTCGTTTTGCTTCTATTTCCGTTTGCTAATTGCTCTGCATCATCTGATTTCCCTTTTCTGTTTTAGCAGTATGAACCACTGTGTTCCAGATTTCGAAATCGAAATGGATGACGAAGAATACCCCATACTCTTCTCTTCTGGCTTCCATCTCCCTAAGAAGCCCTTCGCGGAAGAGGATGGAATCATGGAGCTCTTTTGGCAAAACGGCCCGGTCGTGGTGCAGAGCCAGAACCAGCGGCCTCTCAGAAAACTGCCGCCGGCGAGGCACGCCGACGATGGGATACCTTCTGGACCATCTACGGCAAAGGAGATTGAGAATCGTCACTCACAGCAAGTAGAAAATATCCACAGCCAACATGTGTTCATGCAAGAAGACGAAATGGCTTCCTGGCTCCACAATCCCATCGTCGACGATTCTCCCTTGGATCACAATTTCTGCGCCGACCTCTGCTATTCGCCACCTACAATCAACAATAATAGCAACCAAATTAACAACAGGACCATGAACACCAATGTCCGCACATCTCAGGTGACGGAGCTCCGGCAGCCGTCGAGGTCGGTGGCTCCTTGGCCACCGATGCTGCCTGCAAAGAAGCCGGAGACGATACACGACTCCGTGCAGTTCTCGAAACTCAACGCGAGAGTTGAACCCGGGCCATCGAGTTCGAGGAACGCGGCGAGGGAATCCACGGTGGTGGATTCCTGCGATACTCCAGCCGCGGCTGCTGCGGCGGCGGCGGCTGCTTCTGGAGTTTCGGAGACTGTAAGAAGCTCGGCGGAGCCAACGGAAGGAGACGCATGCCGTGGAAGCATGAGCACTACTGGTGTGGCGGCGCCTTCGACGACGACCGCTGGCGGATGGACTGGAGGAAGGGACGCGATGGCGTGCGAGATGACGGAGACGTCTTCTCCGGGAGGATCGAGTGGCAGTGCTGAACCGGCTCACAAGTCGCCATCGGAGGATCGGAAACGGAAAGGCCGGGAAGCCGATGACTCCGAGTGCCACAGCGAGGATGTCGATTATGAATCTGCGGAAGCAAGAAAACAAGTTCGTCGATCGAAATCAACAAGGAGATCTCGCGCTGCAGAGGTCCATAATCTCTCGGAGAGGAGGCGCCGAGATAGGATTAATGAGAAGATGAGAGCTTTACAAGAACTTATTCCTCGGTGCAATAAGTCTGACAAGGCTTCAATGCTGGATGAAGCAATAGAATATTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGTATGGTGCCTATGATGTATCCAGGAATGCAGCAGTATATGGCAGCAATGGGAATGGGCATGGGCATGGAAATGGGAATGAATAGGCCCGCAGTGATGCCATTTCCCAATATGTTTGCAACTGCTTCGGCCATGCCAGCAGCCACTGCGGCTGCTCATTTGGGACCAAGGTTCCCTGTGCCTCCTTTCCATATGGCCCACGTTGCTGCTCCTGATTTATCCAGAATCCAACCTGTAAACCAGTCAGATAATATGCATACTGCTCTTGCTGCATCTGATCCAACTCAGTCACGGATCCCAAACCTCACTGATTCTTATCACCAATGCCTTGGTCCCCACCAGATGCACCTACAATTAATGATGCAGAATCAGACAATGATGCAACAAAATGCCAGCAAGCCAAGTACCAGTAGGGGCCATGAGAATCCAGAAAATCATCAGTCAGAAAATAGATGA 1731 0.5176 MLSLFSFCFYFRLLIALHHLISLFCFSSMNHCVPDFEIEMDDEEYPILFSSGFHLPKKPFAEEDGIMELFWQNGPVVVQSQNQRPLRKLPPARHADDGIPSGPSTAKEIENRHSQQVENIHSQHVFMQEDEMASWLHNPIVDDSPLDHNFCADLCYSPPTINNNSNQINNRTMNTNVRTSQVTELRQPSRSVAPWPPMLPAKKPETIHDSVQFSKLNARVEPGPSSSRNAARESTVVDSCDTPAAAAAAAAAASGVSETVRSSAEPTEGDACRGSMSTTGVAAPSTTTAGGWTGGRDAMACEMTETSSPGGSSGSAEPAHKSPSEDRKRKGREADDSECHSEDVDYESAEARKQVRRSKSTRRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMYPGMQQYMAAMGMGMGMEMGMNRPAVMPFPNMFATASAMPAATAAAHLGPRFPVPPFHMAHVAAPDLSRIQPVNQSDNMHTALAASDPTQSRIPNLTDSYHQCLGPHQMHLQLMMQNQTMMQQNASKPSTSRGHENPENHQSENR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2065 576 Pfam Helix-loop-helix DNA-binding domain 369 415 IPR011598 GO:0046983
Bisa07g2065 576 FunFam Basic helix-loop-helix transcription factor 360 423 - -
Bisa07g2065 576 Gene3D - 360 423 IPR036638 GO:0046983
Bisa07g2065 576 MobiDBLite consensus disorder prediction 218 237 - -
Bisa07g2065 576 CDD bHLH_AtPIF_like 366 428 IPR047265 -
Bisa07g2065 576 MobiDBLite consensus disorder prediction 272 292 - -
Bisa07g2065 576 MobiDBLite consensus disorder prediction 219 236 - -
Bisa07g2065 576 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 365 414 IPR011598 GO:0046983
Bisa07g2065 576 PANTHER TRANSCRIPTION FACTOR PIF3 54 225 IPR044273 GO:0003700|GO:0006355
Bisa07g2065 576 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 432 IPR036638 GO:0046983
Bisa07g2065 576 SMART finulus 371 420 IPR011598 GO:0046983
Bisa07g2065 576 MobiDBLite consensus disorder prediction 305 319 - -
Bisa07g2065 576 MobiDBLite consensus disorder prediction 320 380 - -
Bisa07g2065 576 MobiDBLite consensus disorder prediction 254 380 - -
Bisa07g2065 576 MobiDBLite consensus disorder prediction 551 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2065 Bisa-ChrBisa07 48959132 48964138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2065 29 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.611 5.84e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa07g2065 HLH 2.1e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0701 03 9338758 9342282 Bisa07g2065 07 48959132 48964138 CCT
Bisa07g2065 07 48959132 48964138 Bisa07g2065 07 48959132 48964138 ECH