Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g2003 ATGGAGGAAGACGAGGACAGAATTTTGCTTAATAGTTTAGGCGTAGAGTCTGCCAATGCCGAATGTATCGAGAGAGACGTATTAGCTGAGGCAAGGAATGATGTGGTGACCATTACTGAAACTGATGGGACGTCAAGGGGGGAATCTCCTCAGAAGTCTGAAAATGTTGATCCATCATCTACTATCAAAGAAGAACTTTATCATAAGCTAAGGGCAGTTGATTTTGAAATAGATGCAGTTGCTTCTACTATTCAAGAGGTGAGAAATGTTGACTGTAAAGGAGATTATAGTATTGTTGGTGATGACAGCCGGGACCAAGGGACTTCCGAGTATAATTCCTCCAATGATTTGGATCTTCAGCATGTTCTTGCTGCTGATAGGTTAGAAAGCCTAAAGAAGACAAAGGCTCAACTAGAAAATAAGCTTTCGGAGTTTTTTAAGGAGAAGACTTCCAAAAGTATTGATCATGACAAAGTAATCTTTAATTTGGTGAAGGAAGAGCGAAGACCCAAGAGGAAACCTAAAGAAGTTCAAAAATTACACAAAAGCTCAGGAAAACGGCATAAAACAGTGTCATTCAATGACGATGTTGATTTTGATGCAGTTTTGGATGCTGCATCTGCAGGCTTTGTTGAAACAGAAAGGGACCAATTGGTGAGGAAAGGAATTTTAACCCCTTTTTCCAACCTGAAGGGTTTTGAGCGCCGCTTTCAACAATCAGAAACGTCTAGCAGTTATAATGCAAGTCAGGAAGAAAAGACTGATGATCTTGCTTCTTCTAGTGTTGAAAGGGCTGCCAGATCAATATCTGAGTGCTTTCTACAATCAGAAACGTCTAGCAGTTATAATGCAAGTCAAGAAGAAAAGACTGATGGTCTTGCTTTTTCTAGTGTTGAAAGGGCTGCCAGATCAATATCTGAGGCAGCAAGAGCTCGCCCAACCACCAAGATGCTTGAGTCTGAAGATCTGCCGAAGCTTGAAGCGCCCACTCATCCTTTTGTCAGACTCAGGGGACCACTGAAACTATCTCAATCCCAAGAAAGAGAGGCACAGAAGAAAAAAAATTTCAGAAGGCAAAAGAGGCGACCTTTGCCTGGTAGGAAATGGACAAAGCGTGTTTCTAGTGAGGACATACATTTGGGAGAGACTGAAGACGCAAGTGGTTCCATGGACACTTCCAGTTGTGAAAATTTAGAGGTGCAGGATGTTGAACTTGCTGATCATGAACCTTCTTTTATAACATTAGAAGGTGGACTGAAAATCCCTGATAATATTTTTGATGCACTATTTGACTATCAAAAGATTGGTGTTCAATGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGGAAAACCATCCAGATCTTATCTTTTCTTGGTGCATTGCATTTTAGTGGCATGTATAAACCAAGCATTATTATTTGTCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTCGAAAGTGGTACCCTAAATTTCAGGTCGAGCTTTTACATGATTCTGCTCAAGATCCTGCAGCTAGAAAGAGGCGATCCAAATCTGATGAAACAGACTATGAAAGTAATAGTTCAATTGATAGTGATTATGAGAAGAATATGCAATCAAGAAACACAAGAAAATGGGAATCCCTGATAAGTCGTGTCATGAGATCAGAATCTGGATTGCTTATCACCACATATGAGCAGCTCAGAATATTGAGGGACCTGTTGCTTGACATTGAATGGGGTTATGCAATTCTTGATGAAGGGCATAGAATAAGGAATCCAAATGCTGAAATTACACTAGTTTGCAAACAGCTACAGACTGTACACCGCATCATAATGACTGGTTCACCTATACAGAACAAACTGACTGAACTTTGGTCATTGTTTGATTTTGTTTTTCCGGGAAAGTTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATCACCGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCTACAGCATACAGGTGTGCTGTGGTGCTACGTGATCTAATCATGCCTTATCTTCTCCGACGGATGAAGGCAGATGTAACTGCCCTACTTCCAAAGAAAACTGAGCATGTTTTATTTTGCAGTCTGACAAGAGAGCAAGTATCTGCTTATAGAGCATTTTTGGCAAGCACTGAAGTGGAGCAAATCTTGGAGGGACGCAGGAATTCTCTTTATGGAATTGATGTGATGCGTAAGATTTGCAACCACCCTGACTTACTTGAAAGGGAACATGCCTTAAATAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCACAGGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTTCTCTTTTCTCAAACCCAGCAAATGCTTGACATTATTGAGAATTTTCTGACTACGGCTGGCCATAATTACCGAAGAATGGATGGAATCACTCCCATAAAACAAAGAATGGCTTTAATAGATGAATTCAATGCCTCAAGTGATATATTTATTTTCATTTTGACAACCAAAGTAGGGGGTTTAGGGACGAATCTTACTGGCGCAGACAGGGTGATTATCTTTGACCCTGATTGGAACCCTTCAACTGACATGCAGGCTAGAGAGCGTGCTTGGCGAATTGGTCAGAAACGGGATGTGACAGTGTATAGGTTGATCACACGAGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACTAATAAAATATTAAAGAACCCACAGCAGAAAAGATTTTTTAAAGCTCGGGATATGAAAGATCTTTTCACACTGAATGTGGATGGAGAAACAGGGTCAACTGAAACATCAACAATTTTCAGTCAGATATCTGAAGAAGTAAATATTGTTGGGACACATGAAGATAAGCAGGATAAGCATATACATCCTCAAGCTACTGAGCCAGGTTCTGATAATGCTGCAGTTAATAATGATGGTAGATCAGAGACAGGAGCACAAAGGGGAAAGGGAAAAGAGAAAGCTGATCATAAAGATGAGGTAGATGAGGAAACAAATATACTGAGAAGTCTTTTTGATGTCCACGGGTTACATAGTGCTGTTAACCATGATTTGATCATGAATGCCAACGATGAGGAAAAATTGAGGCTCGAGGTGCAAGCTTCCCAGGTTGCACAGAAAGCTGCAGAAGCTTTACGTCAGTCACGAAAGCTCCGAAGTTGTGACAGCATCTCTATTCCTACATGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCTTCTATACGGCGGAAGTTCGGTTCAACTGTGAATTCCCAGTTGATAAACAATTGCAAAGTATCTGATGAGTTTCCTAGCGGTGGAACTAACAAATTAAATGGAATTGCTGCTGGGGCATCATCAGGTAAGGCATTATCTTCAGCTGAACTCTTGGCTCGAATCCGGGGTAACCAAGAAAGAGCTATTGGTGCTGGGCTAGAGCATCAGTTTGGTGATGTTGGATCTTCTAGGGCTTCTAGAAGGTTATCAGGAGTGCAACCTGAAGTGTTGATCCGGAAAATCTGTACATTTCTACAAGAGAGAGGTGGTAGTTCCAATTCGTCCAGCATAGTCCAGCATTTTAAGGACAGGGTACCCTCAGAGGATCTTGCATTGTTCAAGAATCTGGTATTTTGTATTGGCGCTAACGTCTTTTTCCCGCTCTGGAAGAATGATGCTATTTTATCTTACCCCCCGGCAGATGGATGTCAGTTAAACTAG 3765 0.4138 MEEDEDRILLNSLGVESANAECIERDVLAEARNDVVTITETDGTSRGESPQKSENVDPSSTIKEELYHKLRAVDFEIDAVASTIQEVRNVDCKGDYSIVGDDSRDQGTSEYNSSNDLDLQHVLAADRLESLKKTKAQLENKLSEFFKEKTSKSIDHDKVIFNLVKEERRPKRKPKEVQKLHKSSGKRHKTVSFNDDVDFDAVLDAASAGFVETERDQLVRKGILTPFSNLKGFERRFQQSETSSSYNASQEEKTDDLASSSVERAARSISECFLQSETSSSYNASQEEKTDGLAFSSVERAARSISEAARARPTTKMLESEDLPKLEAPTHPFVRLRGPLKLSQSQEREAQKKKNFRRQKRRPLPGRKWTKRVSSEDIHLGETEDASGSMDTSSCENLEVQDVELADHEPSFITLEGGLKIPDNIFDALFDYQKIGVQWLWELHCQRAGGIIGDEMGLGKTIQILSFLGALHFSGMYKPSIIICPVTLLRQWKREARKWYPKFQVELLHDSAQDPAARKRRSKSDETDYESNSSIDSDYEKNMQSRNTRKWESLISRVMRSESGLLITTYEQLRILRDLLLDIEWGYAILDEGHRIRNPNAEITLVCKQLQTVHRIIMTGSPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVTALLPKKTEHVLFCSLTREQVSAYRAFLASTEVEQILEGRRNSLYGIDVMRKICNHPDLLEREHALNNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFSQTQQMLDIIENFLTTAGHNYRRMDGITPIKQRMALIDEFNASSDIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGETGSTETSTIFSQISEEVNIVGTHEDKQDKHIHPQATEPGSDNAAVNNDGRSETGAQRGKGKEKADHKDEVDEETNILRSLFDVHGLHSAVNHDLIMNANDEEKLRLEVQASQVAQKAAEALRQSRKLRSCDSISIPTWTGRSGTAGAPSSIRRKFGSTVNSQLINNCKVSDEFPSGGTNKLNGIAAGASSGKALSSAELLARIRGNQERAIGAGLEHQFGDVGSSRASRRLSGVQPEVLIRKICTFLQERGGSSNSSSIVQHFKDRVPSEDLALFKNLVFCIGANVFFPLWKNDAILSYPPADGCQLN 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g2003 1254 CDD SF2_C_SNF 772 897 - -
Bisa07g2003 1254 SMART ultradead3 425 657 IPR014001 -
Bisa07g2003 1254 MobiDBLite consensus disorder prediction 38 57 - -
Bisa07g2003 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 690 IPR027417 -
Bisa07g2003 1254 MobiDBLite consensus disorder prediction 970 1017 - -
Bisa07g2003 1254 FunFam Protein CHROMATIN REMODELING 8 407 689 - -
Bisa07g2003 1254 Gene3D - 697 984 IPR027417 -
Bisa07g2003 1254 MobiDBLite consensus disorder prediction 514 530 - -
Bisa07g2003 1254 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 441 640 IPR014001 -
Bisa07g2003 1254 MobiDBLite consensus disorder prediction 1000 1017 - -
Bisa07g2003 1254 Gene3D - 402 689 IPR038718 -
Bisa07g2003 1254 Coils Coil 121 148 - -
Bisa07g2003 1254 SMART helicmild6 803 886 IPR001650 -
Bisa07g2003 1254 Pfam Helicase conserved C-terminal domain 779 886 IPR001650 -
Bisa07g2003 1254 PANTHER SNF2/RAD54 FAMILY MEMBER 239 1217 - -
Bisa07g2003 1254 MobiDBLite consensus disorder prediction 306 393 - -
Bisa07g2003 1254 MobiDBLite consensus disorder prediction 38 60 - -
Bisa07g2003 1254 CDD DEXHc_ERCC6 429 639 - -
Bisa07g2003 1254 MobiDBLite consensus disorder prediction 369 384 - -
Bisa07g2003 1254 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 777 936 IPR001650 -
Bisa07g2003 1254 MobiDBLite consensus disorder prediction 514 542 - -
Bisa07g2003 1254 MobiDBLite consensus disorder prediction 985 999 - -
Bisa07g2003 1254 MobiDBLite consensus disorder prediction 240 261 - -
Bisa07g2003 1254 Pfam SNF2-related domain 432 754 IPR000330 GO:0005524|GO:0140658
Bisa07g2003 1254 FunFam DNA excision repair protein ERCC-6 697 975 - -
Bisa07g2003 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 955 IPR027417 -
Bisa07g2003 1254 MobiDBLite consensus disorder prediction 314 328 - -
Bisa07g2003 1254 MobiDBLite consensus disorder prediction 354 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g2003 Bisa-ChrBisa07 48014614 48021240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g2003 772 940 RAD5 or RAD16-like Gene Family AT5G22750 32.544 1.90e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa07g2003 SNF2_N 7.9e-60 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g2003 07 48014614 48021240 Bisa07g2003 07 48014614 48021240 ECH