Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1984 ATGTGTGATTTTGACCAAACCATTGCTAGGTCAAACTATTGTCTTCAAGAAACTTTTTTGAAAGCGGTGTCGGTTCCTCCACCTCAGACCAAGATTGCCCAGAAAGAGCACCAAACAATAAGGCAGCAATGGCTTAAGTTTTTGTTGAGATTCATCTTCACTCATCCTTCAAGATCAGCATATGAAAAACAAGTTGATGTATATAAAGCAACTCTGAACTTCCTGATTTTCTCACTCTTTTCTTTTCTGAGCATAGCCATGACTAGAAAGAAGGTGAATTTGGCATTCATAGCCAATGACTCTGCGAGGAAAGCCACGTTCAAGAAAAGGAAGAAGGGGATGATGAAGAAGGCTCATGAATTAACTACCCTTTGTGGGGTTGATGCATGTGTCATAGTTTACAGTCCCTACGATCCTCAGCCTGAGGTGTGGCCTTCTCCCATGGGAGTCCAACGTGTGCTCAAGAGGTTCGAGTCCATGCCTGAGTTGGAGCAGCGCAAGAAAATGGTGAGTCACGAGGGCTTTATGAGGCAGAGGATCATGAAGGCCAACGAGCAAGTGAGGAAGATGAAGAAGGAGAATAGGGAGAAGGAGATGGCCCAAATGATGTTTCAGTATGTGGGTGCGGGGCTGGTTTTGCACAATATGAGTGTGGGTGATCTTAATGATCTGACATGGCTGATCGAGCAAAACCTGAGGGATATCAATAGGAGATTGGAGGATGATGAACATGGCCAATGTGCAGAAGCAAGAGATGTTTGTGAGGATGATGAACAATGGTGGGGATGA 789 0.4474 MCDFDQTIARSNYCLQETFLKAVSVPPPQTKIAQKEHQTIRQQWLKFLLRFIFTHPSRSAYEKQVDVYKATLNFLIFSLFSFLSIAMTRKKVNLAFIANDSARKATFKKRKKGMMKKAHELTTLCGVDACVIVYSPYDPQPEVWPSPMGVQRVLKRFESMPELEQRKKMVSHEGFMRQRIMKANEQVRKMKKENREKEMAQMMFQYVGAGLVLHNMSVGDLNDLTWLIEQNLRDINRRLEDDEHGQCAEARDVCEDDEQWWG 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1984 262 FunFam agamous-like MADS-box protein AGL80 99 183 - -
Bisa07g1984 262 Gene3D - 99 182 IPR036879 GO:0003677|GO:0046983
Bisa07g1984 262 Coils Coil 180 200 - -
Bisa07g1984 262 PANTHER MADS BOX PROTEIN 89 224 - -
Bisa07g1984 262 CDD MADS_SRF_like 88 171 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bisa07g1984 262 SUPERFAMILY SRF-like 88 181 IPR036879 GO:0003677|GO:0046983
Bisa07g1984 262 SMART madsneu2 87 146 IPR002100 GO:0003677|GO:0046983
Bisa07g1984 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 96 137 IPR002100 GO:0003677|GO:0046983
Bisa07g1984 262 PRINTS MADS domain signature 109 124 IPR002100 GO:0003677|GO:0046983
Bisa07g1984 262 PRINTS MADS domain signature 124 145 IPR002100 GO:0003677|GO:0046983
Bisa07g1984 262 PRINTS MADS domain signature 89 109 IPR002100 GO:0003677|GO:0046983
Bisa07g1984 262 ProSiteProfiles MADS-box domain profile. 87 135 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1984 Bisa-ChrBisa07 47586040 47589885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1984 87 240 Type I MADS-box Gene Family AT5G48670 59.740 4.48e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa07g1984 SRF-TF 1.2e-19 No_clan