Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1980 ATGGCTACTTCAGACTCTGCTTTACCCGTATTCGCCATTGTTGTGATCAGTATCATGGCCACGGCTTTCTTGCTCATCGGCTACTTCATTTTGGTCACCAAATGCTGCTCCAGCATCCACCATCTCAACCCTCTGGCATGGGTGTCCATCCTGCGTCCCAGACACAGCGAAGATCGCTTCATAGCTCTCTCCCCCACCATATGGAATCGAGGTCTGGATGAATCTGTCATCCGAGAGATCCCAACATTCCAGTTCGTCAAAGGAAACGACTATGGAAGCAGTAGCAACACAAGTGTGTATTGGTGCGTGGTGTGTTTGAGTGAGTTTCAAGAACAGGACGTGCTCAAAGTTCTACCCAGTTGCAGCCACGCCTTTCACTTGGATTGCATTGACATTTGGCTTCAGAACAACGCCAATTGCCCTCTCTGTAGATCAACCATTTCAGGAACTACTCGTCGTCCTCCGGACCATATTGTAGCACCCAGCTCTTCTCCTCAAGATTCTCAGTTGCTCTCCAACATGGGTAGTGATGAAGACTTTGTGGTCATCGAATTGAGGGGAGAAGATGGGGCAACATTTCCAAACAGGCAACATGAAAGAAACGAGTCAAGCAGGGGAAGCATAGCACAGAGCAGAAGTACCGGTCAGTGTACGAGGAAGATGGAACATAAGCTGGGTCAGTTGAAACCCAGGAAGTGGCAACGTGCTTCAATCATGGGGGACGAGTGTATTGACGTCTATTTGGATGTTCAAGCCATGATCACGCAGCAGCAAAATAGAGCAAGTGGGAGTGAAGATGGTAATAGTAGTAGCAGAGGTCGAAGGTCTCTCTTTCCATTTCGGAGTGGTCGAGGGTCCAGAAATGCAGTGCTTCCTCTGGAGAATGAGGGCAGAGGGACCCACCCAGAAGAGAAGACAATGAGGAATGTCTTCTTCCGAATCATCTCCACCTTCTTTTTTGTCTCTAAGCTATCATATGCTTACTGGGAAAGTGATGAATGA 1002 0.483 MATSDSALPVFAIVVISIMATAFLLIGYFILVTKCCSSIHHLNPLAWVSILRPRHSEDRFIALSPTIWNRGLDESVIREIPTFQFVKGNDYGSSSNTSVYWCVVCLSEFQEQDVLKVLPSCSHAFHLDCIDIWLQNNANCPLCRSTISGTTRRPPDHIVAPSSSPQDSQLLSNMGSDEDFVVIELRGEDGATFPNRQHERNESSRGSIAQSRSTGQCTRKMEHKLGQLKPRKWQRASIMGDECIDVYLDVQAMITQQQNRASGSEDGNSSSRGRRSLFPFRSGRGSRNAVLPLENEGRGTHPEEKTMRNVFFRIISTFFFVSKLSYAYWESDE 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1980 333 CDD RING-H2_EL5-like 102 144 - -
Bisa07g1980 333 SUPERFAMILY RING/U-box 101 155 - -
Bisa07g1980 333 SMART ring_2 102 143 IPR001841 -
Bisa07g1980 333 MobiDBLite consensus disorder prediction 191 230 - -
Bisa07g1980 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 149 IPR013083 -
Bisa07g1980 333 PANTHER RING-H2 FINGER PROTEIN ATL16 246 294 IPR044600 GO:0016567|GO:0016740
Bisa07g1980 333 Pfam Ring finger domain 102 144 IPR001841 -
Bisa07g1980 333 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Bisa07g1980 333 MobiDBLite consensus disorder prediction 191 205 - -
Bisa07g1980 333 MobiDBLite consensus disorder prediction 258 276 - -
Bisa07g1980 333 MobiDBLite consensus disorder prediction 258 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1980 Bisa-ChrBisa07 47527178 47528519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1980 2 245 C3H Transcription Factor Family AT1G04360 41.045 1.27e-53 179