Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1948 ATGAACAAGCAAACCCCACTCTTTGTCAGTTGTTTATATATTGTTAAGAATAGGGCAATAAAACCAACAAACACCACTCTTTGTTGTTTTATTCTTTTTGGAGCAGCCAAGCAGGTTCTAAACCGACAAAGTGGCCCACCACTTGAACCTTCCAAGTCAGTTTCTGCATGTGAATGTGTGATAGAGAATCTCCAGTTCTCCACGAAACACGCCAAATTTGTTAGACTTGCTGCTATAATTCCTGGCATTATATACATGGAAATCTTTCGTAAATACTTGTCCAGGACTGATATCAATCACAGGCTCTCGATTCCTTCAATTGCATTTTCTCACCATTTCCCATCAATCTTCCATGGCAATAGAGTCAACATTAGAGTGAGGTACGGCTATGAAAACGATAAGTCATGGAACTTGCCATGCTACATTAGAGAAACTAGTTCTCTTTATGACAAGCCAGTTATATCAGGAGGTTGGCGTCGCTTTGCTACTGATAAAAAATTTGCTGAGGGCGATCTTCTCATATTCTACATGGAACGAGATCAACAAGACCGCGTTTATCGTTTTGTGGTGCTGAGAGAGGATGTTGATGAAATGGGTACCGCATGTAAAAGAGAGAATTTGAGGGAGCAGAGACCAGAAAAAAAAAATGTCTTGATAGGATGTGAAGCAGTGAAATTTGACATTGGTTACAAGACAAACATCATACACAAAGTGCACGATTCTTTACGCCCCAAGCAAGAGTGTGGCGGTACCAGAGAGGATTCTCACCGGCCTTCTTCTCTACTGCCGTTCTATGATCTCCATGCTCTTCCTCGGCCGCCTCGGCGAGCTCACCCTCACCGGCCTTTTTCTCTACGGCGTTCTATGATCTCCATGCTCTTCCTCGGCCGCCTCGGCGAGCTCACCCTCGCCTTCGGCATGGAGCGCATCTGCGGCCAAGCCTTTGGAGCCGAGAAGTTCACCCTCCTTGGCCTCTGTTTGCAGAGAACCATTCTCCTTCTCCTCTCCACTTCCCTACGGATTTCTCTGCTTTGGCTCTACATAAAGCAAATCCTTCTGTTTGGTGGTCAGGATGAAGCCATAGCTACACATGCTCAATCATATATTCTCTATTCCATCCCTGACCTCTTGGCTCAATCCCTCTTACACCCATCACGGGTTTACCTTCTTCCCTCTTCTTCTTGGGTACGCACAACAAATATGCTCCACGTCGTCCTCTGTTTTTCTATGTCTTCTGTCTTGTATCTGGGCTGCAGGGAAGAAGAAGACGTCTCTGTGCTGTCTCTAGTTCGAATTTACTGGTGCTGGCCGGGTCAGTTGGTGGGTCTCATGGGTCAGGCGGATGGTCAGACAGGACAAGTGGCGCTGTGCAATTCACCCACGGATTTTTGA 1392 0.4619 MNKQTPLFVSCLYIVKNRAIKPTNTTLCCFILFGAAKQVLNRQSGPPLEPSKSVSACECVIENLQFSTKHAKFVRLAAIIPGIIYMEIFRKYLSRTDINHRLSIPSIAFSHHFPSIFHGNRVNIRVRYGYENDKSWNLPCYIRETSSLYDKPVISGGWRRFATDKKFAEGDLLIFYMERDQQDRVYRFVVLREDVDEMGTACKRENLREQRPEKKNVLIGCEAVKFDIGYKTNIIHKVHDSLRPKQECGGTREDSHRPSSLLPFYDLHALPRPPRRAHPHRPFSLRRSMISMLFLGRLGELTLAFGMERICGQAFGAEKFTLLGLCLQRTILLLLSTSLRISLLWLYIKQILLFGGQDEAIATHAQSYILYSIPDLLAQSLLHPSRVYLLPSSSWVRTTNMLHVVLCFSMSSVLYLGCREEEDVSVLSLVRIYWCWPGQLVGLMGQADGQTGQVALCNSPTDF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1948 463 CDD B3_DNA 88 192 IPR003340 GO:0003677
Bisa07g1948 463 Pfam MatE 300 389 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bisa07g1948 463 ProSiteProfiles B3 DNA-binding domain profile. 124 194 IPR003340 GO:0003677
Bisa07g1948 463 SUPERFAMILY DNA-binding pseudobarrel domain 88 189 IPR015300 -
Bisa07g1948 463 Pfam B3 DNA binding domain 98 192 IPR003340 GO:0003677
Bisa07g1948 463 PANTHER MULTIDRUG RESISTANCE PROTEIN 288 419 - -
Bisa07g1948 463 Gene3D - 86 198 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1948 Bisa-ChrBisa07 46891170 46898153 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1948 79 186 RAV Transcription Factor Family AT3G25730 27.193 6.29e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bisa07g1948 MatE 4.9e-14 CL0222