Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1936 ATGGCAACGGAAGAGCCTACTGTAGCTGTGGAACCCGCACCGGAACCGGCCGTTGTTGAGCCAACTGAGGAGAAAGAGGCCACCAAGGCGGCTGGTAAGACCAAGAAAGCTAAGGAGCCAAAGCCGAAAAAAGCTGCTGCTCCCAGATCCCGGAACCCTCCAACCCATCCTCGTTATGAAGAGATGATCAAGGACGCGATTCTTACGCTGAAGGAGAAGACTGGTTCGAGCCAGTACGCTATTACTAAGTTTATCGAAGAGAAACACAAGCAACTTCCACCCAACTTTAGGAAGCTTGTGTTGATCCAATCGAAGAAGCTCGTGGCTTCGGGTAAGCTTGTCAAGGTCAAAGGCTCCTTCAAGCTTCCTTCTGCTAAGTCATTGGCACCAAAGGCAACCGGTAATTCTCTTCCCACAAAGAAGAAGCCTGCAGCTGCTAAACCCAAGGCTAAATCAGTTTCCAAGCCTAAGGAGACTAAGACCGCCAAGGCGGCCACTAAAGCTCCTGCTAAGCCGAAGGCTGTTGCCAAGGCAAAGCCTAAAGTAGCTGCCAAGTCTAAGGCTGCTCCGAAGCCCAAAGCTGCTCCGAAGCCCAAAGCTGCTCCGGCTAAGTCCAAGCCAGCTGGCTCGAAGCCAAAAACTGCTGCTAAGGCGAAGCCAGCTGCAAAACCAAAGCCCAAGGAGAGACCGGCCAAGGCTTCACGGACATCGACGAGGACAACTCCTGGGAAGAAAGTCCCTGCTCCTAAACCGACGCCAAAGAAGGCTGCCGCTCCCAAGAAGGCTCCTGCCAAAAGCGTTAAGCCTAAGAGTGTAAAGTCTCCGGCAAAGAAGGCTTCCACCAGGAGGGGAAAGAAGTAA 861 0.5285 MATEEPTVAVEPAPEPAVVEPTEEKEATKAAGKTKKAKEPKPKKAAAPRSRNPPTHPRYEEMIKDAILTLKEKTGSSQYAITKFIEEKHKQLPPNFRKLVLIQSKKLVASGKLVKVKGSFKLPSAKSLAPKATGNSLPTKKKPAAAKPKAKSVSKPKETKTAKAATKAPAKPKAVAKAKPKVAAKSKAAPKPKAAPKPKAAPAKSKPAGSKPKTAAKAKPAAKPKPKERPAKASRTSTRTTPGKKVPAPKPTPKKAAAPKKAPAKSVKPKSVKSPAKKASTRRGKK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1936 286 MobiDBLite consensus disorder prediction 119 286 - -
Bisa07g1936 286 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa07g1936 286 PANTHER SINGLE MYB HISTONE 4 28 199 IPR044597 GO:0003691
Bisa07g1936 286 MobiDBLite consensus disorder prediction 271 286 - -
Bisa07g1936 286 FunFam Histone H1 50 135 - -
Bisa07g1936 286 Gene3D - 50 134 IPR036388 -
Bisa07g1936 286 MobiDBLite consensus disorder prediction 18 46 - -
Bisa07g1936 286 CDD H15 53 133 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa07g1936 286 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa07g1936 286 SUPERFAMILY "Winged helix" DNA-binding domain 52 132 IPR036390 -
Bisa07g1936 286 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa07g1936 286 PRINTS Histone H5 signature 187 204 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa07g1936 286 PRINTS Histone H5 signature 150 164 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa07g1936 286 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa07g1936 286 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa07g1936 286 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1936 Bisa-ChrBisa07 46647685 46648640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1936 57 124 Single Myb Histone (SMH) Gene Family AT1G72740 36.765 1.94e-09 55.5