Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1935 ATGGGAAGGATAATCTCCGTCCTCATCTCAAGTTGTCATCGGAGATCCCCAAATGGAGCAATCTCCACGGAAATTCCCAAATGTGAGAATGTTTGCCATCCTCAGTCAATCGGTTCATGAAACCCTAGTCATCCGTCCCACTCGAGCACTGTATCCGGCCTTCGATTCTCAGTCGCAGCAATGGCGGATGTTGAAGGAGATGTTGCACCAGGACAGCCAAAGAAGAGGACGTTCAAGAAGTTCAGTTTCAGAGGGGTTGATCTGGATGCGCTCCTGGACATGTCTACGGACGAGCTTGTCAAGCTCTTCCATGCGCGGGCTCGCAGAAGGTTTCAACGCGGTTTGAAGCGAAAGCCTATGGCACTGATCAAGAAGCTGCGTAAGGCGAAACGGGAGGCCCCACCCGGGGAAAAGCCAGAACCAGTAAGGACTCACCTCCGTAACATGATCATTGTGCCTGAGATGATTGGTAGCATTATTGGTGTTTACAATGGGAAGACCTTCAATTCAGTTGAAATTAAACCAGAAATGATTAGCCATTATCTAGCTGAATTCTCGATCTCTTACAAGCCTGTTAAACATGGTAGGCCTGGTATCGGTGCTACTCACTCCTCGAGGTTCATTCCTCTAAAATGA 636 0.4858 MGRIISVLISSCHRRSPNGAISTEIPKCENVCHPQSIGSXNPSHPSHSSTVSGLRFSVAAMADVEGDVAPGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNSVEIKPEMISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1935 211 ProSitePatterns Ribosomal protein S19 signature. 164 188 IPR020934 GO:0003723
Bisa07g1935 211 SUPERFAMILY Ribosomal protein S19 115 195 IPR023575 GO:0003735|GO:0005840|GO:0006412
Bisa07g1935 211 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 70 211 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bisa07g1935 211 Gene3D 30s Ribosomal Protein S19; Chain A 69 211 IPR023575 GO:0003735|GO:0005840|GO:0006412
Bisa07g1935 211 NCBIfam 30S ribosomal protein S19 78 211 IPR005713 GO:0003735|GO:0006412|GO:0015935
Bisa07g1935 211 FunFam 40S ribosomal protein S15 68 211 - -
Bisa07g1935 211 Hamap 30S ribosomal protein S19 [rpsS]. 107 200 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bisa07g1935 211 Pfam Ribosomal protein S19 109 194 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bisa07g1935 211 PRINTS Ribosomal protein S19 family signature 176 191 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bisa07g1935 211 PRINTS Ribosomal protein S19 family signature 144 163 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bisa07g1935 211 PRINTS Ribosomal protein S19 family signature 164 176 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1935 Bisa-ChrBisa07 46608632 46618124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1935 61 211 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 85.430 5.33e-88 254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g1935 07 46608632 46618124 Bisa07g1935 07 46608632 46618124 ECH