LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g1905	ATGTTTAATGCCTCCCGTGCTTCTTCTGGAATTGAAATCCTGATAGGAAACCTCCATATCCCGACCCGAATATATGGATCTACAGGAAAACTTGCAGTTCAGCCCGGCAAGCCCAGAATGGATGAGCAAGGGGGACAACGCATGGCAGTTGACGGCGGCGACTCTGGTGGGCCTGCAAAGCGTGCCGGGTCTCGTCATCCTGTACGGAAGCATAGTGAAGAAGAAATGGGCAGTGAACTCGGCCTTCATGGCGCTCTACGCATTTGCGGCCGTACTGTTTTGTTGGGTTGGGTGGGCTTATTCGATGTCATTCGAACCAACTTTTGTGCGTGGATGCTGTTTGTCCCTCTCTGGGTCACCTTCTCCTACACCATCTGTGCCTTTAGCATATGGTCCCCCAATGGATGGTTATTCAAGATGGGCCTCATTGATTACTCTGGAGGCTTCGTTATTCACCTCTCTTCTGGGGTTGCTGGTTTCACTGCAGCCTTCTGGGTGGGGCCAAGGGCAAGCAAAGATAGGGAGAGGTTTCCTCCGAACAACATACTTCTAATGCTGGCTGGGGCGGGACTTCTGTGGATGGGGTGGACAGGATTCAACGGTGGAGATCCATACACAGTGAGTATAGATGCATCCCTCGCCGTTCTTAACACCCACGCGTGCACCGCCATGAGCTTGCTCACCTGGCTTCTCCTTGACATCCTATTCTTCGGGAAGCCTTCTGTCATTGGCGCCACTCAGGGCATGATCACTGGCTTGGTTTGCATCACCCCCGCTGCCGGAGTGGTGCAAAGTTGGGCAGCGATATTAATGGGGGTAATGTCGGGGAGCATACCGTGGTACACAATGATGGTACTGCACAAGCAAATAAGACTGTTGAAAATGGTGGACGACACGATGGCAGTATTCCACACGCACGCGGTGGCGGGTTGCTTAGGTGGCATTCTGACGGGGTTCTTCGCGGATCCGAAGCTGTGCCGGCTGTTCTACCAGGTGGAGGATTGGGAGCACTATACGGGCCTTGCTTATGGGCTTCAGAGTAGGCGAGCCATGGTGGGCCTCCGGCAAATGGGGGTGCAGGTGGTGGGGATCGTGTTCGTGTTAGGGCTCAACGTCACCACCACCACCATTGTGTGTTTGGTGGTTCGGATGGTGCTTCCTCTCCGGCTGTCGGAAAAGGAGCTTCAAATTGGGGACGATGCTGTTCATGGGGAGGTAGCTTATGCGCTGTGGGGCGACGGAGAGAGGCTCGAGACTGCCAGTCCTGAAACGGACCCATCCGCTTTTGAAAAAAATGAGTGGCCCACTTTGGAACCACCTTCCCTTGAGGAGGCCCAATCGGAATGA	1347	0.5427	MFNASRASSGIEILIGNLHIPTRIYGSTGKLAVQPGKPRMDEQGGQRMAVDGGDSGGPAKRAGSRHPVRKHSEEEMGSELGLHGALRICGRTVLLGWVGLFDVIRTNFCAWMLFVPLWVTFSYTICAFSIWSPNGWLFKMGLIDYSGGFVIHLSSGVAGFTAAFWVGPRASKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYTVSIDASLAVLNTHACTAMSLLTWLLLDILFFGKPSVIGATQGMITGLVCITPAAGVVQSWAAILMGVMSGSIPWYTMMVLHKQIRLLKMVDDTMAVFHTHAVAGCLGGILTGFFADPKLCRLFYQVEDWEHYTGLAYGLQSRRAMVGLRQMGVQVVGIVFVLGLNVTTTTIVCLVVRMVLPLRLSEKELQIGDDAVHGEVAYALWGDGERLETASPETDPSAFEKNEWPTLEPPSLEEAQSE	448

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g1905	448	ProSitePatterns	Ammonium transporters signature.	144	169	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Bisa07g1905	448	SUPERFAMILY	Ammonium transporter	105	390	-	-
	Bisa07g1905	448	MobiDBLite	consensus disorder prediction	417	448	-	-
	Bisa07g1905	448	PANTHER	AMMONIUM TRANSPORTER MEP2	105	419	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Bisa07g1905	448	Gene3D	Ammonium transporter AmtB like domains	93	411	IPR029020	-
	Bisa07g1905	448	Pfam	Ammonium Transporter Family	105	408	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Bisa07g1905	448	MobiDBLite	consensus disorder prediction	35	73	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g1905	Bisa-ChrBisa07	46252505	46254723	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g1905	105	433	Inorganic Solute Cotransporters	AT2G38290	58.055	6.02e-125	365