LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g1867	ATGAGGGAGGGGCTTAGATCTCGGAAGCGATTGGAGAAGCCGGAGGAAGATGAGGTGTCTGAAAGGGGACTAGTTCAAAATAAAGGGCATGTCATCAAGCAAGAGAAGCCCGGTTTTAGCGGCGAGGATTCTCCGCATGAGAGAGAGGCATTAGACTCGGCAGTTACGAAGACGGAAGTGGAGAATGTAGTAAAAGACGAATGTCAATTGAACTTGGGCACGAATACAAATGTTGGGTTAGTTGAGAATGGGAACAATTGTAGGGTTTTAGGTTGTGGGGAAGGCACTGAGAGGAAGGTGAAGAAGGAAGAGGACACAAAAGTGCAAATTGATGGTCGAGTATTACGCTCACAGTTAAAGAGGGTAGATGGTAAGAAATCTGGTAATGAAGAGAACAATGTTGTGCTTCTGGGGACAAGTAATGAGTGTTGTGTGCTTGAGAAGATAAAGGTTAAGGCAGAAAGGGTTGAGGCTGGTGAATATGTTAGTTATGGTTGTGAGAAGCTTAAGGAGAATAAGAAAGGGAATGTCAAAAGGAAGTTGAAACGGAAGCGTGGGAGGCCCCCCAAAATGGAGGTGAAAGAGCAGGATGTTGAGTTGCAGCGGAGGCAAGGAAGGCCACCCAAGACTGGGCAAAATTATAAGCTTATGAAACTAGCACATAGTGAAAATGGAATAGTGGGCTCACAAAAAGGTAAAAAAGGTTTAACTATGAAACATGGTGCTAATACAAGTTCAACTGGTATACGCTTCAAAAGGAGATCTTTCAGGAAGGAGTTAAAAAGGGAGTTTTTTTCTCCTGTCAAAATCGAGAACAACATGGTAGCATCGCCATTGAGGTCAAATTCTTTAAATGTGCCTGTTGCTGAGAAAAGTGGAAAGAGTAAAGCGAAGCAGTTAGTGAGGGACCAAATAATGGAATTACTCACAGCTGCAGGCTGGACTGTTGACTACAGACCTAGGAACGGCAGATGTTACAATGATGCAGTGTATGTTAGTCTAGACGGAAAGACCCACTGGTCAATTACTTTGGCCTACAACAGGCTCAAGAAGCATTATGAAGATGGTGATGGTGAAGGTAAGGTGTATGGGCCAGGTTTTAAATTTACACCTATACCAGAAGAGGAATTCAAGACGTTAACTAAGGTAATGAACAAGAAAAGAGAAGACAGACAGAAAATGAAACAAAAAGGGAAAAAGGGTGGAAATAAAGTTACTGGAGTCAAGAAAAAATTGAAAAAAGAAAAACAAGGGAAGGGAAAAATGAAGAGGAAATGGTCACTCATTGAGGAGGATAGTTCTTATGCTTCTTCGCCGAATGGGAAGCGACAGAAAACAAGAAACAGGAAGCGAAGTGCATTGTTGGTTCGCGATGCTGACAAAGAGATAGATTCAGAAGTTGATGGATATGTACCTTACAATGGAAAACGAACTGTTCTTGCCTGGATGATTGATTTGGGAACTGTCTTGGAAAATGGGAAGGTTCATTGTATGAACCACAGAGGCGAAGGTGCCGTATTGGAGGGTATGATAACAAGAGGTGGCATTCACTGTGGCTGTTGTAATGACATTGTAACAATTTCAGAATTTGAAGCTCATGCAGGAAGCAAGCTCTCTGATCCATTTAGAAATATATGTATAGAGGGAGGAACTTCTCTCTTGCAATGCCTGCTGGACTCATGGAATAAACAAGATGAATCTGAACGTAAAGGTTTTCATTTCATTGATGTTGCCGGTGAAGACCCTAATGATGACACATGTGGTATCTGTGGAGATGGTGGAGACCTGATCTGCTGTGATGGTTGCCCATCAACATTTCATCAAAGCTGCTTGGGTATAAAAAAGTTTCCATTTGGTGACTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGTCTGGTTGGAAGTGCAAACCAAAGTGAAGACTATGGTGATATTACTGAGTCTGCACTACTTACATGCCCTTCATGTGAACAAAAATATCACAGATCCTGTATAGAGGTGGATGGTGTCCGAATTGATGATTCTAGTGATGCATTTTGTGGAAACGGATGTGAAGAGTTAAATGAGAGACTCAAAATGCTTCTTGGGGTTAAACATGAAATTGAAGATGGATTTTCTTGGACATTTATTTGTCGGTCAGATATTGGCTCAGATGCATCTCAGATAGAGTCTCAGATGGTTGAATGTAATTCCAAGCTAGCTGTTGCATTATTGATAATGGATGAGTCGAACTTTGACCGCCTCAACTATAGTGGATTTATTACTGCTATTCTAGAGAGAGGAGATGAAATTGTCTGTGCTGCATCTATTAGGATCCATGGGAACCGGCTAGCAGAGATGCCATTTGTTGGGACCCGCTCTATGTATAGGCGACAAGGAATGTGTCGCCGGCTTCTAGGTGCCATTGAATGTGCACTCAGCTCTCTAAATGTTGGGTTATTGGTAATACCAGCTATCGCAGAACTCACAGAAACTTGGACTTCAGTTTTTGGGTTTGGGCCGCTTGACCATACAAGTAATCAAATGATAAAGAACATGAATCTGTTGGTATTTCCTCATGTAGATATGTTACAGAAAAAGATACCAAAGGTTAAATCTACCGACGAAAATCCAATTCCTATAGAAGTTTCCAGTCCTCAACCTCAGAAGAATAAAAAAATGCCGGGGGTAGCGAATAATTATCATGAGTTGGTCTCATCTGGATCTGATATGATCATTTCTGCTGAGGTGCCTGCCTCAGATGCGTGCCGGATAATTGATAAATCCATATCTATTGAATCTAGATCTCAGCTTGCTGATGGCTCATTCAACAACTCACCTGCTTGTGATAGTGAGACTGTACTTCACCATAAATGTTCAGAAGATGTACAAAGTCAAGTTGTCTGTCAGGCAATTTGTCATAATCTGACAGTGGAAGACAATGGTGCCGTAGATGATAATGTGAGCAATGCTCAGTACCAAGCTGCACAAATAAATACATGTCAGAATGCTAAGTCTGCTCATAATGGGAAAACAGTAGATTTAGATAACTCATTGAGGGATTGCCGTGTGTCAGAGGAGGGAGAGCAATTTCTCAGAGTATCAGATGAGGTAGTTACAAATAGCAACAGTGCTGAGGATTCCCCACACCACTTGTCAGGAAGTATTCCTTTTGGATCACAGATTGTTTCTTGTACTAAGGAATCAAAAGAGTCTGATGAAAGTACCTACCATGATTCAAGGAATATAATCCCATTTAAGGATGATGGAGAAACTTTACATCATGATTCTCAGAAATTTGAGGTTGCTGATGGTGTTTTTTGTTCACATAAATATTCTGACGGTTGTGAACTGATAAGTGACCAGGTCTGTATTCAGCACCACTCCGTGGGATCAAAGAAGTTGCATTCTGAATCTGTCAATGGTTATGGTTCTCAGTGTACACCCAATGGAATTTGTGTGTTCGGTGACATAGCTCTTCCAACTGGCAACTTGATGCACCCAAGCGAAGACATACCTTGCATTAAATCTTCGGGTGTGGTTAGTGAGCTAAATGCTGATGAAGCAGAAGTCTGTGCTGCCAAGGCACCCAATTTTCAGACTCTTAAAAAGTCTGAAAATTGCCAATCGATAGAGTCTGAAAATTGCCAATCGATTCAAATGGCCTCAGGTTCTTGTGAGGAAATTGCGAATGGCGTCCATGTGAACAGTGAAGCATCTAGTGTAGCTGAGTTCAATTTTCTTTCATCTGATAGAAACTTACTTCTTAATAATATCCCTCGGATGGACCACTCTTCAGAGCTACCAGAGCCTGGTTTACAAGTTGATCAAGCTGCACAGAGTAATGGTCCATCCTTGTGTAGCCCAAACAATGCTGGCGTGGCTCTTAACTGTGCGTCCGCTGGTGGTACTTCATGTGGTGGCGCTGAGGTGATTGTTCTGTCAAACCAAGCCAGTTGA	3942	0.4191	MREGLRSRKRLEKPEEDEVSERGLVQNKGHVIKQEKPGFSGEDSPHEREALDSAVTKTEVENVVKDECQLNLGTNTNVGLVENGNNCRVLGCGEGTERKVKKEEDTKVQIDGRVLRSQLKRVDGKKSGNEENNVVLLGTSNECCVLEKIKVKAERVEAGEYVSYGCEKLKENKKGNVKRKLKRKRGRPPKMEVKEQDVELQRRQGRPPKTGQNYKLMKLAHSENGIVGSQKGKKGLTMKHGANTSSTGIRFKRRSFRKELKREFFSPVKIENNMVASPLRSNSLNVPVAEKSGKSKAKQLVRDQIMELLTAAGWTVDYRPRNGRCYNDAVYVSLDGKTHWSITLAYNRLKKHYEDGDGEGKVYGPGFKFTPIPEEEFKTLTKVMNKKREDRQKMKQKGKKGGNKVTGVKKKLKKEKQGKGKMKRKWSLIEEDSSYASSPNGKRQKTRNRKRSALLVRDADKEIDSEVDGYVPYNGKRTVLAWMIDLGTVLENGKVHCMNHRGEGAVLEGMITRGGIHCGCCNDIVTISEFEAHAGSKLSDPFRNICIEGGTSLLQCLLDSWNKQDESERKGFHFIDVAGEDPNDDTCGICGDGGDLICCDGCPSTFHQSCLGIKKFPFGDWHCIYCCCKFCGLVGSANQSEDYGDITESALLTCPSCEQKYHRSCIEVDGVRIDDSSDAFCGNGCEELNERLKMLLGVKHEIEDGFSWTFICRSDIGSDASQIESQMVECNSKLAVALLIMDESNFDRLNYSGFITAILERGDEIVCAASIRIHGNRLAEMPFVGTRSMYRRQGMCRRLLGAIECALSSLNVGLLVIPAIAELTETWTSVFGFGPLDHTSNQMIKNMNLLVFPHVDMLQKKIPKVKSTDENPIPIEVSSPQPQKNKKMPGVANNYHELVSSGSDMIISAEVPASDACRIIDKSISIESRSQLADGSFNNSPACDSETVLHHKCSEDVQSQVVCQAICHNLTVEDNGAVDDNVSNAQYQAAQINTCQNAKSAHNGKTVDLDNSLRDCRVSEEGEQFLRVSDEVVTNSNSAEDSPHHLSGSIPFGSQIVSCTKESKESDESTYHDSRNIIPFKDDGETLHHDSQKFEVADGVFCSHKYSDGCELISDQVCIQHHSVGSKKLHSESVNGYGSQCTPNGICVFGDIALPTGNLMHPSEDIPCIKSSGVVSELNADEAEVCAAKAPNFQTLKKSENCQSIESENCQSIQMASGSCEEIANGVHVNSEASSVAEFNFLSSDRNLLLNNIPRMDHSSELPEPGLQVDQAAQSNGPSLCSPNNAGVALNCASAGGTSCGGAEVIVLSNQAS	1313

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g1867	1313	PANTHER	PHD FINGER PROTEIN 12	280	1101	IPR042163	GO:0003714\|GO:0045892
	Bisa07g1867	1313	MobiDBLite	consensus disorder prediction	392	421	-	-
	Bisa07g1867	1313	MobiDBLite	consensus disorder prediction	1	49	-	-
	Bisa07g1867	1313	MobiDBLite	consensus disorder prediction	384	452	-	-
	Bisa07g1867	1313	MobiDBLite	consensus disorder prediction	869	888	-	-
	Bisa07g1867	1313	SMART	PHD_3	586	627	IPR001965	-
	Bisa07g1867	1313	SMART	PHD_3	628	686	IPR001965	-
	Bisa07g1867	1313	MobiDBLite	consensus disorder prediction	175	212	-	-
	Bisa07g1867	1313	MobiDBLite	consensus disorder prediction	1	24	-	-
	Bisa07g1867	1313	SUPERFAMILY	FYVE/PHD zinc finger	576	628	IPR011011	-
	Bisa07g1867	1313	CDD	PHD2_CHD_II	587	626	-	-
	Bisa07g1867	1313	ProSiteProfiles	Zinc finger PHD-type profile.	584	629	IPR019787	-
	Bisa07g1867	1313	SUPERFAMILY	Acyl-CoA N-acyltransferases (Nat)	754	838	IPR016181	-
	Bisa07g1867	1313	MobiDBLite	consensus disorder prediction	188	204	-	-
	Bisa07g1867	1313	Pfam	Tify domain binding domain	509	558	IPR032308	-
	Bisa07g1867	1313	MobiDBLite	consensus disorder prediction	35	49	-	-
	Bisa07g1867	1313	MobiDBLite	consensus disorder prediction	872	888	-	-
	Bisa07g1867	1313	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	576	649	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g1867	Bisa-ChrBisa07	45553476	45563091	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g1867	180	886	PHD Transcription Factor Family	AT5G36670	39.798	8.81e-178	557

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa03g0496	03	6325186	6334621	Bisa07g1867	07	45553476	45563091	CCT
	Bisa07g1867	07	45553476	45563091	Bisa07g1867	07	45553476	45563091	ECH