Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1787 ATGTCGTTTAGGAGTATAATCCAAGATATAAAGGGTGAGTTTGGGAGTATTTCAAGGAAAGGATTTGAGGTGAAGTTGGGGTATGGGATGAGATCGAGGTCGCAGTCATACCGTGATGCTGGGGATAGCTTAGTGGTTGTTGATGGTTTGAAGCAGAGCTGTTGGGCTAATATGCCACCGGAGCTCTTGAGGGATGTGCTGATGAGGATAGAGGCCTCTGAAGATACCTGGCCTGCCCGAAAACATGTGGTTGCCTGTGCTGGTGTTTGCCGCAGTTGGAGAGAGATCATGAAAGAAATTGTGAAACCTCCTGAAGTATCTGGCAAGTTGACACTCCCAATCTCCTTGAAGCAGCCTGGTCCGAGGGGCTCTCTTCTTCAGTGCTATATTAATCGGAATCGCAGTAATCAAACATATTATCTGTTCCTTGGCTTAAACGAAGCTTCAAATGACGATGGCAAGTTCCTTCTTGCTGCACGCAAATGTCGACGTCCTACCCATACAGACTATATAATTTCTCTAAACTGTGATGCTGTGTCAAGAGGGAGTAGCACCTATATTGGAAAGTTGAGATCAAACTTTCTCAGTACCAAGTTCACTGTGTATGATGCACACCCTCCACTTCTTGGAGCCAAAGTCACTAAATCTCGTTCAACCAGGCTAGTTAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCTGGCAACTATCCCATTGCGCATATCTCATATGATCTGAATGTCCTGGGCTCCAGGGGCCCTAGGATAATGCATTGTGTTATGGATGCCATCCCTGCTTCGGCTGTTGAACCCGGAGCTGGTTGCTTCCCCGAAGAATGGGGTTTCGGAGCAGGCTCAGGAAAATGTTATTCTCCAGTTCGGAAAAGTGGGAAAAGACGTGTTCACCATGGATTATCAGTATCCGATCTCAGCTTTTGA 936 0.4669 MSFRSIIQDIKGEFGSISRKGFEVKLGYGMRSRSQSYRDAGDSLVVVDGLKQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACAGVCRSWREIMKEIVKPPEVSGKLTLPISLKQPGPRGSLLQCYINRNRSNQTYYLFLGLNEASNDDGKFLLAARKCRRPTHTDYIISLNCDAVSRGSSTYIGKLRSNFLSTKFTVYDAHPPLLGAKVTKSRSTRLVSLKQVSPRVPAGNYPIAHISYDLNVLGSRGPRIMHCVMDAIPASAVEPGAGCFPEEWGFGAGSGKCYSPVRKSGKRRVHHGLSVSDLSF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1787 311 PANTHER TUBBY-RELATED 42 269 - -
Bisa07g1787 311 Pfam Tub family 116 269 IPR000007 -
Bisa07g1787 311 SUPERFAMILY Tubby C-terminal domain-like 104 271 IPR025659 -
Bisa07g1787 311 Pfam F-box domain 55 101 IPR001810 GO:0005515
Bisa07g1787 311 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Bisa07g1787 311 CDD F-box_AtTLP-like 55 99 - -
Bisa07g1787 311 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Bisa07g1787 311 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Bisa07g1787 311 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Bisa07g1787 311 Gene3D Tubby Protein; Chain A 115 297 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1787 Bisa-ChrBisa07 44380416 44383424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1787 1 271 TUB Transcription Factor Family AT2G47900 78.022 3.09e-155 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bisa07g1787 Tub 7.2e-51 CL0395