Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1621 ATGAATGGCGAGTCAAACAATACATTCGGTACAGGTGGACCTCCCTTTACCAATGGTGACTGTGGATATGGTTTTAACCATTCCATGCCTCGTCCTGGGAGGAAACGAGGTTGGCATCACTCTAACCAAGGAACTTCTCAAGATCAAGTTGATGGTGCATATAACGTGAAACTTTATGTTGCCCCGGTTCCGAGAACCTCAAATGAAGCTGATATTCGCCTTGTGTTTGAAGGACATGGAACTATTGTTGAAGTTGTTCTTTTAAGGGATAAGAGAACTGGAGAACGACAAGGAAGCTGTTTTGTGAAATATGCAACATTAGATGAAGCTGACAGGGCCATTAAAGCTTTAAGCAATCAGTATACTTTTCCAGGGGAATCAGCTCCAATTGTTGTCAGATTTGCTGACCGAGAACGCGAGCGTCTAGAGGTGGTGGACAAAGTGTTTGTTGGTTACATCAACAAAGAAGCTTCAAAAAAGGAAATTGAAGAAATATTTTCCCCTTATGGAAATGTAGAGGATATCTTCATCGCACAGAGTCGTGGATATTGTTTCGTCAAATTTTCAAATAGAGAAATGGCGTTGGCAGCAATCAAAGGGCTGAACAATACATTCAAGATGAGGGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAAACCAAAGACTGGAGAACCCAGGCCACCCCTGAACTTTGGTGATTCCATTGGAGGGAGTAATCTGCCAATGGCCCCACATCATCCCACAATTCCACTCCCACGAGGTGCTTCTCATATGCAAAACTGGGAACCTGCTAATACTGTGGTGCAACAACCATTTCCTCCCCAACAAGCACATTCACAACTGGCTTCAGTGCCCTTGCAGCCGATTCAAGCTCAAAAGTTGTCATCTCAACCAGTTGTTACTGAGGTGCAGAGGCAGTCACATCCAGCTGATTCATCAGCTCAAAACATAGAGCAGCAGCTAAGTTCTCAGTTGTTGAAGAGGCCTGACGCCATCGGGGCGGCCACTCCCACCCTAGGGGAGGTCGACGCTGGTGCGAAACTGGAGCTGACGGCAACTATTGTGAACTTTGAGGACAAAGAGGGTGTGTTCTTGGCCTGCATACTTGTTTTTGACGCTGAAGACGCGGTGGTTGACGGAAGCAGAGGAATTCAAAAGAGAGAAGAAAGCCAGAATGAGCAAGAAGGTGAAAGAAGAGGCTTTGAAGAAGGGCATGATGATGAAGAAGAGGATAACAATCAGTCTCTAGGTTGGAGTCTGTCAACACCAAAATCGATTCCTTCTTCATTGCATGCAATTGTAGTGGTGGTGACTGGAAGCAATCCTTATACTGTTGCTGGAAGTACCTCACCAGATATGCCAGAAAGTCCCGAAGAGGAAGTTTTTCCAGAGTGTGACTGGAGTGAACACACCTGCCCTGATGGCTATAAGTACTACTACAATTGCGTCACTTGTGAAAGCAGGTGGGAGAAGCCTGAGGAATATGCCTTGTCTGAGAACGAATTACAAAAGCAGCAAGAGCAGGAGGATTATGATTGTCTAAATTCACAATTGGCGTTATCTTCCTGTGAACAAGTTGCTTAA 1596 0.4511 MNGESNNTFGTGGPPFTNGDCGYGFNHSMPRPGRKRGWHHSNQGTSQDQVDGAYNVKLYVAPVPRTSNEADIRLVFEGHGTIVEVVLLRDKRTGERQGSCFVKYATLDEADRAIKALSNQYTFPGESAPIVVRFADRERERLEVVDKVFVGYINKEASKKEIEEIFSPYGNVEDIFIAQSRGYCFVKFSNREMALAAIKGLNNTFKMRGCDHPLIVRFADPKKPKTGEPRPPLNFGDSIGGSNLPMAPHHPTIPLPRGASHMQNWEPANTVVQQPFPPQQAHSQLASVPLQPIQAQKLSSQPVVTEVQRQSHPADSSAQNIEQQLSSQLLKRPDAIGAATPTLGEVDAGAKLELTATIVNFEDKEGVFLACILVFDAEDAVVDGSRGIQKREESQNEQEGERRGFEEGHDDEEEDNNQSLGWSLSTPKSIPSSLHAIVVVVTGSNPYTVAGSTSPDMPESPEEEVFPECDWSEHTCPDGYKYYYNCVTCESRWEKPEEYALSENELQKQQEQEDYDCLNSQLALSSCEQVA 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1621 531 MobiDBLite consensus disorder prediction 386 424 - -
Bisa07g1621 531 SUPERFAMILY WW domain 470 500 IPR036020 GO:0005515
Bisa07g1621 531 MobiDBLite consensus disorder prediction 301 321 - -
Bisa07g1621 531 Pfam WW domain 469 496 IPR001202 GO:0005515
Bisa07g1621 531 CDD WW 469 498 IPR001202 GO:0005515
Bisa07g1621 531 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 221 IPR000504 GO:0003723
Bisa07g1621 531 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 125 IPR000504 GO:0003723
Bisa07g1621 531 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 205 IPR000504 GO:0003723
Bisa07g1621 531 MobiDBLite consensus disorder prediction 386 409 - -
Bisa07g1621 531 Gene3D - 42 142 IPR012677 -
Bisa07g1621 531 SMART ww_5 466 498 IPR001202 GO:0005515
Bisa07g1621 531 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 137 IPR000504 GO:0003723
Bisa07g1621 531 PANTHER RNA BINDING PROTEIN 43 319 - -
Bisa07g1621 531 Coils Coil 501 521 - -
Bisa07g1621 531 SUPERFAMILY RNA-binding domain, RBD 32 141 IPR035979 GO:0003676
Bisa07g1621 531 MobiDBLite consensus disorder prediction 219 262 - -
Bisa07g1621 531 SMART rrm1_1 147 217 IPR000504 GO:0003723
Bisa07g1621 531 SMART rrm1_1 57 133 IPR000504 GO:0003723
Bisa07g1621 531 ProSiteProfiles WW/rsp5/WWP domain profile. 471 498 IPR001202 GO:0005515
Bisa07g1621 531 SUPERFAMILY RNA-binding domain, RBD 147 242 IPR035979 GO:0003676
Bisa07g1621 531 Gene3D - 467 513 - -
Bisa07g1621 531 MobiDBLite consensus disorder prediction 21 48 - -
Bisa07g1621 531 ProSitePatterns WW/rsp5/WWP domain signature. 471 496 IPR001202 GO:0005515
Bisa07g1621 531 Gene3D - 143 227 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1621 Bisa-ChrBisa07 41430784 41439379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1621 55 205 Eukaryotic Initiation Factors Gene Family AT4G34110 28.662 1.94e-11 64.7