LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g1612	ATGGAGTACAGAGGTGTTGGGATGATGAGAAGCTTATCTGATAGTGGAATTGAAGAAGGGATGGGAATAAGGAAAGGTGCCTGGACAGAGGAAGAGGATGCTATTCTGGCCAACTACGTCACTCTCCATGGCGAAGGACACTGGAACTTCCTCGCTCGATCTGCAGGGCTAAGCCGAACAGGGAAAAGCTGCAGATTGAGATGGCTAAACTACCTGCGTCCTAATGTACGGCGTGGCAATATCACCCTGCAAGAGCAGCTCCTAATTCTTCATCTCCATTCCCGATGGGGCAATCGGTGGTCCAAAATAGCGCAAGAGTTGCCGGGAAGAACAGACAACGAGATAAAGAACTATTGGAGGACTAGAGTGGTGAAGCAGGCGAAGCAACTGAAATGTGATGTGAATAGCAAACAGTTTAGAGATGCTATGCGTTTCGTGTGGATGCCACGCTTGCAGGAACGGATTCAAGCCTCCTCATCTCAAACCTCGTCGTCCCACTCATCACTGCTTCTTCGCTCTCATTCCAATTCCACCCAATTTGATTGCCATTTAATCAGTACCTGCTCCAATTATGCAGAACAGGAATCCAGTTCTTGGAATGACGTGGAATATTCCCAAGAGATCCAAGCCGTTGAATTTGAAGCAGCCAATGCTGACCTCTGGACCCATGAAAACATATCCTTCCTGCAACAACAGCTTGCCGATGACTTGTGA	714	0.4804	MEYRGVGMMRSLSDSGIEEGMGIRKGAWTEEEDAILANYVTLHGEGHWNFLARSAGLSRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILHLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDAMRFVWMPRLQERIQASSSQTSSSHSSLLLRSHSNSTQFDCHLISTCSNYAEQESSSWNDVEYSQEIQAVEFEAANADLWTHENISFLQQQLADDL	237

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g1612	237	Pfam	Myb-like DNA-binding domain	25	72	IPR001005	-
	Bisa07g1612	237	Pfam	Myb-like DNA-binding domain	78	121	IPR001005	-
	Bisa07g1612	237	Gene3D	-	25	77	-	-
	Bisa07g1612	237	ProSiteProfiles	Myb-like domain profile.	73	123	IPR001005	-
	Bisa07g1612	237	FunFam	MYB transcription factor	82	145	-	-
	Bisa07g1612	237	FunFam	Myb transcription factor	25	77	-	-
	Bisa07g1612	237	SUPERFAMILY	Homeodomain-like	22	119	IPR009057	-
	Bisa07g1612	237	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	22	206	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Bisa07g1612	237	SMART	sant	24	74	IPR001005	-
	Bisa07g1612	237	SMART	sant	77	125	IPR001005	-
	Bisa07g1612	237	CDD	SANT	27	72	IPR001005	-
	Bisa07g1612	237	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	77	127	IPR017930	-
	Bisa07g1612	237	ProSiteProfiles	Myb-like domain profile.	20	72	IPR001005	-
	Bisa07g1612	237	ProSiteProfiles	Ig-like domain profile.	108	198	IPR007110	-
	Bisa07g1612	237	Gene3D	-	82	123	-	-
	Bisa07g1612	237	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	20	76	IPR017930	-
	Bisa07g1612	237	CDD	SANT	82	121	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g1612	Bisa-ChrBisa07	41180915	41181816	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g1612	18	175	MYB Transcription Factor Family	AT2G47190	68.987	2.93e-78	235

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa07g1612		Myb_DNA-binding	1.5e-15	CL0123