LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g1603	ATGCATTGCCCTCTGACTTCAAGTATGTTTAACAAATTTGTCATTGGTTTCATTTTCTCAGGTCTTCCGAACGGTTTTTCATGTGTTACAGTTGGTGTAGCACCTGCTTCTGGGTCAAGAAATGTAAACGCAAATACAGTTGGTGTTGATAAGTTGCCTGCCGAGATGAACGACATGAAAATTAGGGACAGTAAGGAAATGGAAGCGACTGTCGTAGATGGAAATGGGACTGAGACAGGACATATAATTGTCACTACCATTGGTGGTAAAAATGGCCAACCAAAGCAGACCATAAGCTACATGGCTGAGCATGTTATTGGGCAAGGATCTTTTGGATTAGTTTTCCAGGCAAAGTGCTTGGAGACAGGTGAAACTGTGGCTATAAAAAAAGTTCTTCAAGACAAGAGGTACAAGAACCGGGAACTGCAAACCATGCGTCTTCTTGACCATCCTAATGTTGTATCTTTGAAGCACTGTTTCTTTTCAACAACTGAAAAAGAGGAGCTTTACCTGAACTTGGTATTAGAGTATGTTCCTGAAACTCTCCATCGGGTGATCAGACACTATAACAAAATGAATCAAAGGATGCCATTGATATATGTCAAACTTTATTTTTACCAGATATGTCGATCACTTGCTTACATTCACAACAGTATTGGAGTGTGTCACAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACTCATCAGCTGAAGCTGTGCGACTTTGGAAGTGCAAAAGTGTTGGTAAAAGGAGAACCAAACATATCATACATCTGTTCTAGGTACTATAGAGCTCCTGAGCTCATCTTTGGTGCAACTGAGTACACAACGGCCATTGACATCTGGTCTGCTGGTTGCGTACTTGGTGAACTATTGCTTGGCCAGCCTCTTTTTCCTGGTGAGAGTGGAGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATTAAATGCATGAACCCTAACTACACAGAGCATAAATTTCCACAAATTAAAGCTCATCCTTGGCACAAGATCTTTCACAAACGTATGCCATCTGAAGCTGTGGATCTTGTCTCAAGACTACTGCAGTACTCCCCAAATCTTCGAATCACAGCTTTGGAGGCTTTGATTCATCCGTTCTTTGACGAGCTGCGTGACCCAAATGCCCGCTTGCCAAATGGGCGTTTCCTTCCTCCACTGTTTAACTTCAAGGCCAATGAGTTTAAGGGAGTGCCTGCTGAGATGCTGGTGAAGCTTATTCCACCACATGCAAGAAATCAGTGTCCTTTGTTTGGGTCATAA	1311	0.4226	MHCPLTSSMFNKFVIGFIFSGLPNGFSCVTVGVAPASGSRNVNANTVGVDKLPAEMNDMKIRDSKEMEATVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAEHVIGQGSFGLVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKEELYLNLVLEYVPETLHRVIRHYNKMNQRMPLIYVKLYFYQICRSLAYIHNSIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEHKFPQIKAHPWHKIFHKRMPSEAVDLVSRLLQYSPNLRITALEALIHPFFDELRDPNARLPNGRFLPPLFNFKANEFKGVPAEMLVKLIPPHARNQCPLFGS	436

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g1603	436	Gene3D	Phosphorylase Kinase; domain 1	84	179	-	-
	Bisa07g1603	436	FunFam	Shaggy-related protein kinase kappa	180	428	-	-
	Bisa07g1603	436	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	64	430	-	-
	Bisa07g1603	436	ProSitePatterns	Protein kinases ATP-binding region signature.	106	130	IPR017441	GO:0005524
	Bisa07g1603	436	SMART	serkin_6	100	384	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa07g1603	436	Gene3D	Transferase(Phosphotransferase) domain 1	180	428	-	-
	Bisa07g1603	436	Pfam	Protein kinase domain	101	384	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa07g1603	436	ProSiteProfiles	Protein kinase domain profile.	100	384	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa07g1603	436	SUPERFAMILY	Protein kinase-like (PK-like)	99	409	IPR011009	-
	Bisa07g1603	436	CDD	STKc_GSK3	95	387	IPR039192	-
	Bisa07g1603	436	FunFam	Glycogen synthase kinase-3 beta	84	179	-	-
	Bisa07g1603	436	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	221	233	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g1603	Bisa-ChrBisa07	41018013	41021853	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g1603	106	391	MAP Kinase Gene Family	AT4G01370	37.288	1.68e-57	192

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Bisa07g1603		Pkinase	1.3e-64	CL0016