Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1579 ATGGGCAAATCTTCTAGTTCTTCCTTGTCATCTATCAGCATCAGTAGCGACTATCCTCTTTTCTCAACCGCATCTTCTCTCACACACCTTCCTCCAGTGACAGATCTTAGGCTTGGACTAAGCATTTCACCTACTGAACATCATCATCTTCACTCGTCTGTTTCAAGGAGGAAAACTTCAGATAGTTGGGCACTGGTAAGCAGTTCTAATGTAGTTGAAGTAAATTATTGCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCAATTGGCAGAAAACTGGATTTATTAGCCCATCATGGCTACCATGAATTAGTGAAGACACTTGAGCACATGTTTGACACCACCATTCTCTTGGGGAGTGAGATGGAGGGAGTGCAACCAGAGAGATGCCATGTGCTAACGTATGAAGATGAAGAAGGAGACTTGATCATTGTTGGGGATGTCCCTTGGGAGATGTTCTTGTCCACTGTAAAGAGATTGAAGATCATCAGGGGAGACGCAATGGGGTGTTAA 516 0.438 MGKSSSSSLSSISISSDYPLFSTASSLTHLPPVTDLRLGLSISPTEHHHLHSSVSRRKTSDSWALVSSSNVVEVNYCSFFVKVYMEGIPIGRKLDLLAHHGYHELVKTLEHMFDTTILLGSEMEGVQPERCHVLTYEDEEGDLIIVGDVPWEMFLSTVKRLKIIRGDAMGC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1579 171 SUPERFAMILY CAD & PB1 domains 77 163 - -
Bisa07g1579 171 Gene3D - 73 170 - -
Bisa07g1579 171 ProSiteProfiles PB1 domain profile. 78 168 IPR000270 GO:0005515
Bisa07g1579 171 Pfam AUX/IAA family 31 167 IPR033389 -
Bisa07g1579 171 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 28 167 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1579 Bisa-ChrBisa07 39765356 39766210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1579 81 163 B3 DNA Binding Superfamily AT4G23980 39.759 9.49e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bisa07g1579 AUX_IAA 1.6e-30 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g1154 03 15710062 15710949 Bisa07g1579 07 39765356 39766210 CCT
Bisa07g1579 07 39765356 39766210 Bisa07g1579 07 39765356 39766210 ECH