Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1540 ATGCCTCTGCGTGAGTTATACCGGATGGCTAAAGCGCAGCCTGATTCCAAGGACATAAACAGCACATGTGCTGCTGATCAAGGTTCCGCACTTGAGAATGACTTTTTTGAGTTGGTTTGGGAAAATGGTCAGATTTCAATGCAGGGCCCATCCAGTAGAGCCAGAAAGAGCCCGACTTGTAAGAGTTTGCCATCTCTCGGTGCCAAGATTCGAGATAAAGATGTGGGAAATGGCACCAAAACCAGGATGGGGGAGTTTGGGGATTTAGACTCTGGATTGAATGAATTTCCAATGTCGGTGCCATCAGGTGAAGTGAATTTGAGCCCAGATGAAGACATGGTGCCTTGGTTGAATTATCCGATAGATGACTATTTGCAACATGAATATAATTCTGATCTCTTGCATGGACTATCTGGGGATGCCGTAAATGACATCCCGGCTTCAGATAATTTTTCTCTAATTGATAAAAGGCATAATTGTAATCAGGAATTTAGGGACTCTTATAAGAATCCTGTGCATGATGTTTCAAGTTCAGAACCAGGGATCATTTCCAAGGGATTTTCAGCTGGAGAAGCTCAAACCACTAGAACTAAAGCTACCACAAGTCAGCTATACTCACCATCATCGCCACAATGCCAAACATCACTTGCACCTGTTAGAAACAGAGTATCTGATGTCACTGAAAATAATACAAGCAATGCCACCCAGCATGATCCTTATGGGGAAACCACTCAGATTCCATCTACCTCTAGCGGTTTTTCTAGCTTAAAGATGCAGAAGCATGATCCAACAATCCCAAGTACTAGTTCCACTTCCACCATAATGAACTTCTCCCACTTTGCAAGACCTGTTGCCATCATGAGAGCCAATCTTCAGAGCATTGGGAAGATGTCTGGATTATCTTTAGCAAGATCGGAAATCATGGGAAAGAAGGACAAAGATGCTGCTGTAACTAGCAGCAATCCTCCTGAATCAATCCTTATTGGTTCAAGGAGCGAACATCCAAGAGAATCAAATATGCACTGCCAACAACAGCATATGGAGTCCTCCAAGGCTGCTTTGAAACAGTTAGAACCCAAATCTCTTGAACAGAATCTTACTGCTACTAAACAGTCTGATCCTGCCTGTAAAAAGGATTCCTTTAATAATGATCAAACTTCTAATCAAGTTTTTGGTGAAAGTGGCTCTAAAGGATATACAGCTATTGAAGGAAGCATGGAGCAGGTAGTGGCCTCTTCCTCTGTTTGCTCTGGCAATGGTGTGGAGAGAGCTTCAGACAACTCAAATCAAAATTTGAAGCGAAAAAGTCAAGATACCGAGGACTCTGAGTGCCACAGTGAAGATGTTGAGGAAGAATCGGTAGGCGTTAAAAAGGCAGCTCTTGCACATGGTACATGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCGATTGAGTATCTTAAGACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCCTCCGATGATGTTACACCCTGGAATGCAGCACATGCATGTGCCAATATCTCCATTTCCACCTATTGGTGTTGGCATGCAAATGGGGTTAGGAATGGGATATGGGATAGGTATGCCTGACATCAGTGGTGGATTGTCTAGATTTCCAATGATTCAGGTGCCCCAATTGCAAGGAACCCACCTCTCTGTTCCTCCTCTGTCTGGGCCTACTGCTCTACATGGGATGGCAAGATCAAATCCTCAAATGTTTGGGCTACCTGGTCAGGGACTTCCCTTTCCAATGACACAAGCACCTGCAATGCCTTTCTCAGGAGGGCCTCTTATGAACTCATCAGCTTTGGGATTAAATGCCTGTGGAACGTCTGGATTTGCGAATGTGGATTCAGCTTCAGCCTCTGGCTTAAAGGATCCTATATCAACCACTAACTCTCAAGTTATGCAAAGCGCTGATGGCAGTAACCCAACTAATCAGACATCTACCCAGTGTGAAGCAACAAAAGTTGGATTGGAGGAGTCAGCTTTGGCGCATAATGGTGGTCATGCCTCCGATGCTGATGACAGAGGAGCTGTTAATCCTGGCAAAGAAGATAAACTTGTAACTAATAAAAATGTTATGAACGATGATCAACATTGA 2238 0.4379 MPLRELYRMAKAQPDSKDINSTCAADQGSALENDFFELVWENGQISMQGPSSRARKSPTCKSLPSLGAKIRDKDVGNGTKTRMGEFGDLDSGLNEFPMSVPSGEVNLSPDEDMVPWLNYPIDDYLQHEYNSDLLHGLSGDAVNDIPASDNFSLIDKRHNCNQEFRDSYKNPVHDVSSSEPGIISKGFSAGEAQTTRTKATTSQLYSPSSPQCQTSLAPVRNRVSDVTENNTSNATQHDPYGETTQIPSTSSGFSSLKMQKHDPTIPSTSSTSTIMNFSHFARPVAIMRANLQSIGKMSGLSLARSEIMGKKDKDAAVTSSNPPESILIGSRSEHPRESNMHCQQQHMESSKAALKQLEPKSLEQNLTATKQSDPACKKDSFNNDQTSNQVFGESGSKGYTAIEGSMEQVVASSSVCSGNGVERASDNSNQNLKRKSQDTEDSECHSEDVEEESVGVKKAALAHGTCSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPPMMLHPGMQHMHVPISPFPPIGVGMQMGLGMGYGIGMPDISGGLSRFPMIQVPQLQGTHLSVPPLSGPTALHGMARSNPQMFGLPGQGLPFPMTQAPAMPFSGGPLMNSSALGLNACGTSGFANVDSASASGLKDPISTTNSQVMQSADGSNPTNQTSTQCEATKVGLEESALAHNGGHASDADDRGAVNPGKEDKLVTNKNVMNDDQH 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1540 745 MobiDBLite consensus disorder prediction 417 432 - -
Bisa07g1540 745 MobiDBLite consensus disorder prediction 311 352 - -
Bisa07g1540 745 FunFam Basic helix-loop-helix transcription factor 466 529 - -
Bisa07g1540 745 MobiDBLite consensus disorder prediction 665 701 - -
Bisa07g1540 745 MobiDBLite consensus disorder prediction 170 216 - -
Bisa07g1540 745 CDD bHLH_AtPIF_like 471 533 IPR047265 -
Bisa07g1540 745 MobiDBLite consensus disorder prediction 665 745 - -
Bisa07g1540 745 MobiDBLite consensus disorder prediction 417 451 - -
Bisa07g1540 745 MobiDBLite consensus disorder prediction 188 216 - -
Bisa07g1540 745 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 471 520 IPR011598 GO:0046983
Bisa07g1540 745 MobiDBLite consensus disorder prediction 229 270 - -
Bisa07g1540 745 Gene3D - 467 529 IPR036638 GO:0046983
Bisa07g1540 745 MobiDBLite consensus disorder prediction 367 392 - -
Bisa07g1540 745 SMART finulus 477 526 IPR011598 GO:0046983
Bisa07g1540 745 Pfam Helix-loop-helix DNA-binding domain 475 521 IPR011598 GO:0046983
Bisa07g1540 745 PANTHER TRANSCRIPTION FACTOR PIF3 1 694 IPR044273 GO:0003700|GO:0006355
Bisa07g1540 745 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 468 532 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1540 Bisa-ChrBisa07 39011994 39015705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1540 1 603 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.463 2.78e-72 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa07g1540 HLH 8.2e-14 No_clan