LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa07g1539	ATGGCAAGATCCAAGGTGAAACTCGAGTACATCGCTAATGACGCGGTGAGAAAAACAACATTCAAGAAGAGGAAGGGAGGGTTGATGAAAAAGATGAGCGAAGTGACGACTCTGTGCGGGATTGAGGGGTGCGTTATTGTTTTCGGGCCGGGCCAAGATGGGGCGGAGGTATGGCCCAGCCCAAACGGAGTCCGCGAGGTGATGGCGAAGTACAGGGATATGCCGGAGATGATCCAGGAGCAGAGGAGGCTGAATCAGGAGAGCTTCTTGATGCAGAGGTTGGAGAAGGTGACGGAGCAGGTGAAGAAGATGCGGAAGGAGAACGAGGAGAAGGCCATGAGGCTGGCGTTGGAGGAGAGCGTGGGAGGGACGGGGATGATGATTGTGCAGCGGATGAGAGAGAGGGATCTGAAGGTGATCGGGTGGATGATCGACGAGAGATTGAGGGACGTCGAGAAGAAGATGGAGGCTGCGACGGAGGAGGTGTATGTGCCGGAACCACCTGCAGACTCACGGGGATTCATGGCCACTGTGAGTGCTCGGAATTCAGATGATCGTTTGGGATTTGGTGGGGATGAGGTTTTGCCGCCATTTCAGGACATCAAAGATCACAAATGGAGGGTCAAGGATATGAGAGATATCAACGGTTTAAATGAGGCTGACAATCTTTGTAATGCACGATTATTGACACTGCTGCCTTTGTGGTTTGTACTTTCTTGTCCACCCACTGAAGAAAATATCTATACTTTTATATTATTTGTTATTCTCGGCATATTTGTTGAGGATTTTTGA	792	0.5025	MARSKVKLEYIANDAVRKTTFKKRKGGLMKKMSEVTTLCGIEGCVIVFGPGQDGAEVWPSPNGVREVMAKYRDMPEMIQEQRRLNQESFLMQRLEKVTEQVKKMRKENEEKAMRLALEESVGGTGMMIVQRMRERDLKVIGWMIDERLRDVEKKMEAATEEVYVPEPPADSRGFMATVSARNSDDRLGFGGDEVLPPFQDIKDHKWRVKDMRDINGLNEADNLCNARLLTLLPLWFVLSCPPTEENIYTFILFVILGIFVEDF	263

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa07g1539	263	PANTHER	MADS BOX PROTEIN	3	161	-	-
	Bisa07g1539	263	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Bisa07g1539	263	ProSiteProfiles	MADS-box domain profile.	1	49	IPR002100	GO:0003677\|GO:0046983
	Bisa07g1539	263	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	51	IPR002100	GO:0003677\|GO:0046983
	Bisa07g1539	263	Gene3D	-	14	120	IPR036879	GO:0003677\|GO:0046983
	Bisa07g1539	263	SUPERFAMILY	SRF-like	3	95	IPR036879	GO:0003677\|GO:0046983
	Bisa07g1539	263	CDD	MADS_SRF_like	2	85	IPR033897	GO:0000981\|GO:0000987\|GO:0045944
	Bisa07g1539	263	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Bisa07g1539	263	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Bisa07g1539	263	Coils	Coil	87	114	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa07g1539	Bisa-ChrBisa07	38984061	38985785	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa07g1539	1	156	Type I MADS-box Gene Family	AT5G48670	44.231	1.99e-34	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Bisa07g1539		SRF-TF	5.6e-15	No_clan