Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1500 ATGGATGATAATAAACGTTGGAGGTTGAATCCTAATGGATCTTGTTCTGAGGATGTTAGAATTGGCGACGTCATTTCTGCTTCTGCTACTAATTCTGAATTGCAACGTGGGCCGGTGGGTACTGACTACTTCCGCCTCCTCGCTCCCGAACCGGACGAACCCGGTTCAGGCATGTCGGATCGGTTGATCAAGACCCAGATCGCCAATCACCCTCTTTATCCCAATTTAGTTTCTGCCTTCATAGAATGCCAAAAGGTTGGAGCACCACCAGAACTAGCATCTCTCCTTGAAGAAATGGGCCGTGAAAACCACCCCATGAATGTTCGCCGTGAGATTGGTGACGATCCTGAGCTTGACGACTTCATGAAATCATACTGCCAAGTTCTTCATAAATACAAAGAGGAGTTATCCAAGCCCTTCAACGAAGCCACCTTGTTTCTTTGCGATATCGAATCACAACTTAGAGACCTTTGCAAGGGAACATTCACCAACTCATGGGCTCATCGTTCCGACGAGGGAGGTGATGGCTCAGAGAAGGAAATAAGTGGTGGGGAGGCAGAAGTAGTGGAAGGTGATGAATCTTGTAGCAGTCGTGCGAGTGATAAAGAGCTGAAAGAAATGCTGCTTCGCAAGTACAGTGGTTATCTCAGCAGCTTGAGAAAGGAGTTCTTAAAGAAAAGGAAAAAGGGTAAGCTACCAAAGGATGCTAGAATGGAACTCCTTCAATGGTGGAACTCCCACTACAGATGGCCTTATCCTACGGAGGAGGAAAAATTGAAGCTATCAGAAATGACAGGGCTAGATCAAAAGCAAATCAATAACTGGTTTATAAACCAGAGGAAACGGCATTGGAAGCCATCTGAAGATATGCGTTTTTCGGTGATGGAGGGAGTTAGTGGTGGAGGAGGAGGAGGAGGACACGTGTACTTCAATTCTGGGGGAGGAGCACCTTGA 954 0.4665 MDDNKRWRLNPNGSCSEDVRIGDVISASATNSELQRGPVGTDYFRLLAPEPDEPGSGMSDRLIKTQIANHPLYPNLVSAFIECQKVGAPPELASLLEEMGRENHPMNVRREIGDDPELDDFMKSYCQVLHKYKEELSKPFNEATLFLCDIESQLRDLCKGTFTNSWAHRSDEGGDGSEKEISGGEAEVVEGDESCSSRASDKELKEMLLRKYSGYLSSLRKEFLKKRKKGKLPKDARMELLQWWNSHYRWPYPTEEEKLKLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFSVMEGVSGGGGGGGHVYFNSGGGAP 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1500 317 Pfam KNOX2 domain 112 158 IPR005541 GO:0003677|GO:0005634
Bisa07g1500 317 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677|GO:0006355
Bisa07g1500 317 MobiDBLite consensus disorder prediction 171 198 - -
Bisa07g1500 317 SMART HOX_1 225 290 IPR001356 GO:0003677
Bisa07g1500 317 MobiDBLite consensus disorder prediction 168 198 - -
Bisa07g1500 317 CDD homeodomain 235 287 IPR001356 GO:0003677
Bisa07g1500 317 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 67 293 - -
Bisa07g1500 317 Gene3D - 221 295 - -
Bisa07g1500 317 SUPERFAMILY Homeodomain-like 225 295 IPR009057 -
Bisa07g1500 317 SMART ELK_2 203 224 IPR005539 GO:0003677
Bisa07g1500 317 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677
Bisa07g1500 317 SMART KNOX2_2 108 159 IPR005541 GO:0003677|GO:0005634
Bisa07g1500 317 Pfam ELK domain 203 224 IPR005539 GO:0003677
Bisa07g1500 317 ProSitePatterns 'Homeobox' domain signature. 261 284 IPR017970 GO:0000981|GO:0006355
Bisa07g1500 317 SMART KNOX1_2 61 105 IPR005540 GO:0003677|GO:0005634
Bisa07g1500 317 Pfam KNOX1 domain 63 104 IPR005540 GO:0003677|GO:0005634
Bisa07g1500 317 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1500 Bisa-ChrBisa07 38036740 38040126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1500 47 301 Homeobox Transcription Factor Family AT1G23380 52.852 3.81e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bisa07g1500 KNOX2 8.7e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g1500 07 38036740 38040126 Bisa07g1500 07 38036740 38040126 ECH