Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1462 ATGGTAAGGGGAGCAAAGGTTAGTAGGAAACGAAGTTTCAGGAAAAGGATTCGGTCAAAGGGAAGGTGTTCGGACGATTCAGATGAGGATTATGTGGTTTCAGATGAAGGTAGAGATGTGTCTGATTGTTCAGAGGATTATTGCTTTTCAGATGGATGTGCTTCAGAGGAGAGTTTTGATAGTTTTATAGAGGACGAGGATGAGGAAATTAAAGTGAAGACTTTCAACAGATCCAAGACAAAGAATGGCATTTGTGGGCAGCAGAAAAATGGAAGAAAAACTTCACAAAAGAGGGGTAAGACTACATATGCAGAAAAACTAGAAGAGGAAGATGGAGATTGGAAATATGACGAGGATGAGGATGAGAATGAGGATGAGGATTTTGATTATGATGATGATGAAGAATTTACACCAGAGGAAGAACTAATAAGGAGAGAGAAGAAAAATAATAGCATGAAAATGGGCAAAAAGGTTTTGCAGAAAAGGGTTTCTGCGACCTCTAAAAGAAATCGGAAAAGGAGTAGGAGATCTAGAGCTGCAAGGAAGCCCTTGAGAAAGAAAAGAAGAAAAACTGGGGGTTTGAGGAGGAAAGTAAGATGTGATGAAGATGGTGATTTTATTTACAGTCGCCCAGCCACCAGGATAAAGAGTCCGAGAAAACCAGGCCGGAAAAGGAGAAGACTTCTTGCGGATTCAGATTGTGTCTCTTCTGGATCATCTGATTATGAGTATACCATCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGAGATTGTGTGGAAGTTTGAAAACTAACTTGAGGGGTTCATTACTTGAGACAAAACATGTAGAGGTTGGATTCCACAGGGACCTACATCAGCAAAGGAAGCCTCGAGATCAGAAGGGTAAGGACAAGATAGAGGAACCAGAAGGAAGAAAGGGTAAGGAAAAGGCTGAGGATTTGAGGAGTGATGTGGGAAAGCAGGTGTGCGGAATTTGCCTGTCTGAGGAAGATAAAAGAAGAGTACGAGGAGTACTAAACTGTTGCACTCACTTTTTCTGTTTTACTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTTAAAACTATCAGTAAGCGTGCACGATCAGCAACAAATTTGAGAGAAGTAGTGATACAGGTTCCCAAACGTGATCAGGTTTACCAGCCCTCGGAAGAAGAACTTAGGAGCTATACTGATCCATATGAGTACGTCATTTGTTCAGAGTGTCATGAAGGTGGAGATGATGGCCTTATGTTACTGTGTGATATGTGTGATTCACCTGCGCACACATATTGTGTTGGTCTGGGGCAGGAGGTACCTGACGGTAATTGGTATTGTGAAGGTTGTAGACCAGTTGCTCTGGGATCTTCATGTTCCCATGTTGAAGAACATGTTGCTGACTCAAGGGTGACATTCCAGAGTCTGCCGGGTAGATCATCACCTGTTGAACATGTACGAGAAAATATAGACCATAACTTGATGTCTCCGTCTTTTAGTCAAGGATTTGGGAACCTTTCATCTAGATTTTCCGGCAGAAGTACTGATCGCGCTTCTCCAGTATCTGGAGGAGGAGCACCAACTTTATCAGAGAGACGCTGGATACACCATCAAATTCAACAATTACTTTCAAGCCATAGAATGAATGCTACAACTAGCAGAACAAATGGTATTTTAGCTACCAGTTCAACTAGTAGCTTAAATAGCTTTCAAACTGATCCAAGTAGGGAAGCAGCTACTCTACATACAAGGACACAGGATGTGGGAACATCATATCACACGCACTTTGAGGAGAGACTAGGGAACAATGCTACTCAACTAATACAGAATGGGAATCCTTTATCCTTGAGAATAAACAATTCGAGGAGTGCAGTCATTCAATATCCAACTACCAACAGACCTATGACTGTGAATGGAGCATTATGGCCTGGACTATTGGTGACAACCCCGGTACCAGATTGTGAACAAGTTCATCAATGCCATAGCAGATCAAATACTTTCGCCAACGACATCATGGTCCCTGCTGTCAGAGAAGAGGATAAGTTTCAGAGTGCAAAGGAACAATTACAGTCGATGGTTAAAAGCCACCTGAAGAGTTTGTCCAAAGATATTGATATGGGTCACAGCACTTTCAAGGACATTGCAAGGAGTTCAACGCACACCATACTAGCTGTTTGTGGTCTGGAGCACCGGAAGACTGAGGTCTGCGCTGTACCTCCACCGTCCGTCTGTCCCCACATTGAACTAATGGCTGGTGGACAAACGAGTCTGATTCAAGGACGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTCGTGAAGAGGATCATGGATACAAGAATGCCACATTGGTTACGACTTGGTCTTTAG 2400 0.4296 MVRGAKVSRKRSFRKRIRSKGRCSDDSDEDYVVSDEGRDVSDCSEDYCFSDGCASEESFDSFIEDEDEEIKVKTFNRSKTKNGICGQQKNGRKTSQKRGKTTYAEKLEEEDGDWKYDEDEDENEDEDFDYDDDEEFTPEEELIRREKKNNSMKMGKKVLQKRVSATSKRNRKRSRRSRAARKPLRKKRRKTGGLRRKVRCDEDGDFIYSRPATRIKSPRKPGRKRRRLLADSDCVSSGSSDYEYTISEEEREQVREAERLCGSLKTNLRGSLLETKHVEVGFHRDLHQQRKPRDQKGKDKIEEPEGRKGKEKAEDLRSDVGKQVCGICLSEEDKRRVRGVLNCCTHFFCFTCIMEWAKVESRCPLCKQRFKTISKRARSATNLREVVIQVPKRDQVYQPSEEELRSYTDPYEYVICSECHEGGDDGLMLLCDMCDSPAHTYCVGLGQEVPDGNWYCEGCRPVALGSSCSHVEEHVADSRVTFQSLPGRSSPVEHVRENIDHNLMSPSFSQGFGNLSSRFSGRSTDRASPVSGGGAPTLSERRWIHHQIQQLLSSHRMNATTSRTNGILATSSTSSLNSFQTDPSREAATLHTRTQDVGTSYHTHFEERLGNNATQLIQNGNPLSLRINNSRSAVIQYPTTNRPMTVNGALWPGLLVTTPVPDCEQVHQCHSRSNTFANDIMVPAVREEDKFQSAKEQLQSMVKSHLKSLSKDIDMGHSTFKDIARSSTHTILAVCGLEHRKTEVCAVPPPSVCPHIELMAGGQTSLIQGRCSSCFDSFVGDVVKRIMDTRMPHWLRLGL 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1462 799 SUPERFAMILY RING/U-box 324 373 - -
Bisa07g1462 799 CDD RING-HC_Topors 323 370 - -
Bisa07g1462 799 SMART PHD_3 415 460 IPR001965 -
Bisa07g1462 799 MobiDBLite consensus disorder prediction 283 315 - -
Bisa07g1462 799 MobiDBLite consensus disorder prediction 19 41 - -
Bisa07g1462 799 Pfam Ring finger domain 324 367 IPR001841 -
Bisa07g1462 799 ProSiteProfiles Zinc finger RING-type profile. 325 367 IPR001841 -
Bisa07g1462 799 MobiDBLite consensus disorder prediction 1 41 - -
Bisa07g1462 799 MobiDBLite consensus disorder prediction 73 197 - -
Bisa07g1462 799 Coils Coil 247 267 - -
Bisa07g1462 799 Pfam PHD-finger 415 461 IPR019787 -
Bisa07g1462 799 ProSiteProfiles Zinc finger PHD-type profile. 413 462 IPR019787 -
Bisa07g1462 799 MobiDBLite consensus disorder prediction 77 92 - -
Bisa07g1462 799 SMART ring_2 325 366 IPR001841 -
Bisa07g1462 799 MobiDBLite consensus disorder prediction 162 194 - -
Bisa07g1462 799 ProSitePatterns Zinc finger RING-type signature. 344 353 IPR017907 -
Bisa07g1462 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 463 IPR013083 -
Bisa07g1462 799 SUPERFAMILY FYVE/PHD zinc finger 385 461 IPR011011 -
Bisa07g1462 799 MobiDBLite consensus disorder prediction 1 18 - -
Bisa07g1462 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 384 IPR013083 -
Bisa07g1462 799 MobiDBLite consensus disorder prediction 111 139 - -
Bisa07g1462 799 MobiDBLite consensus disorder prediction 209 239 - -
Bisa07g1462 799 PANTHER F18C1.6 PROTEIN 1 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1462 Bisa-ChrBisa07 37392359 37395174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1462 410 459 C2H2 Transcription Factor Family AT3G01460 45.098 1.88e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa07g1462 PHD 2.1e-09 CL0390