Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1441 ATGAAGAGGGCAGATGGAGAAGTAAACCAAGTGATAGCTAAGAGGAATAGAACTAGTAGACTGGAAAGGGAAGCCAGAACCGAGAATAGAGAAATCGAAGAATCCAAATTGAGGGTAAAGATTCCAGAAGCGCCCATAGACAGTGTTTCAACTATCAACTGCCAAGAACCTAATTCTCCAGACCTCACCTCGGTTCTCCAAGTTTCTGCTCTGCGCACTGCTTCTCCAGATTTTTTGATGCCGCGTTTACGAAAAATGAGTAGGCGGTCTAGTCGCACTATTTATGTTGGCAATCTTCCTGGTGATATTCGATTGAGAGAAGTAGAGGATCTTTTCTACAAGTATGGTCCCATTGTTGACATTGATTTGAAAATCCCTCCAAGACCACCAGGTTATGCTTTTGTTGAGTTTGAGGATCGTCGTGATGCTGAAGATGCTATTCGCTATCGAGATGGTTATAATTTTGATGGTTTTCGATTACGAGTTGAACTTGCACATGGTGGCCGTGGATATTCATCATCAGTAGACCGTTACAGTAGTTACAGTGGTCGTAGTGGTAGCCGTGGAGTTTCCAAGCGTACTGACTATCGTGTTCTGATCACTGGATTACCCTCTTCAGCTTCGTGGCAAGACTTGAAGGATCACATGCGTAAAGCTGGTGATGTATGCTTCTCTCAGGTCTTCCGGGAGCGTGGTGGCATGACTGGGATAGTGGATTATACTAATTACGATGATATGAAATATGCTATCAGGAAACTTGATGACTCAGAATTCCGGAATGCATTTTCTTGGGCATACATAAGGGTGAGGGAATATGATCGATATACAAGGAGTCCTAGTCGTGATTCAAGGAGGAGCTATTCTAGAAGTCCAAGCCGCAGTCCTTATATGTCACGAAGTCGAAGCCGCAGTTGGAGCCAGAGTCCGAGCCAGAGCCGTAGCTATGGTGGCAGGAGCAGAAGTTTGTCTCCAAGAGCAAGACACTCACGACGTTCAGTGTCTCTTTCAAGATGTGGCTTTTTGTGGCGCCATGGGGATTGCATGTTAGGATCTTGA 1056 0.4517 MKRADGEVNQVIAKRNRTSRLEREARTENREIEESKLRVKIPEAPIDSVSTINCQEPNSPDLTSVLQVSALRTASPDFLMPRLRKMSRRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDRRDAEDAIRYRDGYNFDGFRLRVELAHGGRGYSSSVDRYSSYSGRSGSRGVSKRTDYRVLITGLPSSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSWAYIRVREYDRYTRSPSRDSRRSYSRSPSRSPYMSRSRSRSWSQSPSQSRSYGGRSRSLSPRARHSRRSVSLSRCGFLWRHGDCMLGS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1441 351 SMART rrm1_1 93 163 IPR000504 GO:0003723
Bisa07g1441 351 SMART rrm1_1 197 268 IPR000504 GO:0003723
Bisa07g1441 351 SUPERFAMILY RNA-binding domain, RBD 90 261 IPR035979 GO:0003676
Bisa07g1441 351 MobiDBLite consensus disorder prediction 1 32 - -
Bisa07g1441 351 FunFam serine/arginine-rich splicing factor SR34A-like 196 273 - -
Bisa07g1441 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 167 IPR000504 GO:0003723
Bisa07g1441 351 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 86 195 - -
Bisa07g1441 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Bisa07g1441 351 CDD RRM2_SF2_plant_like 196 271 - -
Bisa07g1441 351 Gene3D - 82 195 IPR012677 -
Bisa07g1441 351 Gene3D - 196 273 IPR012677 -
Bisa07g1441 351 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 16 327 - -
Bisa07g1441 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Bisa07g1441 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 260 IPR000504 GO:0003723
Bisa07g1441 351 CDD RRM1_SF2_plant_like 93 164 - -
Bisa07g1441 351 MobiDBLite consensus disorder prediction 278 328 - -
Bisa07g1441 351 Coils Coil 18 38 - -
Bisa07g1441 351 MobiDBLite consensus disorder prediction 289 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1441 Bisa-ChrBisa07 37079439 37089777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1441 88 165 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 5.58e-07 48.9