Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1372 ATGGCCCCACACTCGACCTTCTTCGTAGTCTGGCCCGCCCCTTCACTCACTTCAATTCTTGATCCCCACGATACCTTCTCTTCCATTTATATACCCTCGCCCTCCCATGCCTGCTTTCTATTTCGCTGCCATTTCTCTCTTCTTCATGTGATTCCCGAAACCCCATCACCCACCTCCCTGAAATTCAAAAGTTCCAAAGAAAGGTTGTTCAACTACACAGAGCTCGCCACAATGACTATGAGCTCCATCACCAGTCAACGCAAATGTTGCAGCTTCTCCACTGATCACGGAATCATGCTCATGCCGACCTCCTTAATCCTCCTCCTTCTCTCTCCGGCGCTGCCCCTCACCGCCGCGCAAGCCGGTAACACTGGCCCCACCGATCCTTACTACAACAACTTCAGTCCCTCCATGGCGATTATCGTTGTCATCTTAGTCGCCGCGCTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCGGTGCGCTGATAATCCCAATAGCAGCGTCCGGCAGCTCGCCGGCGTCGCCGGCCGTTCCCGGCGGCAGCATCGCGGTCTTGACCCCGCAGTCATCGAGAGCTTCCCGACTCTGGAATATTCGGTGGTTAAGGTTCACAAGATCGGAAAAGGCGCTCTGGAATGCGCCGTTTGCTTGAACGAATTTGAGGAATCCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTCTTCCATCCTGAGTGTATCGACGAGTGGCTAGCTTCCCACACTACTTGTCCTGTTTGCAGAACGGATCTCGTTCCTCAACCAGACGAATCTGTTCACGGAGTTCTTCCGCTAAACGCCGAGACGGATATCGAAGCCCAACGCGACGCCGTGGAACCGCCGTCCGAACTGCCGAATGCCGATGTTGACCGAGAAGCGGCAGGGCCGGATGTGATGTACCCGAATCAGACGCTGAACCGTAACCGTACGCGCGGGTCTCGGTCGAGCCGCACGCGGAGGTTCCCGAGGTCCCACTCGACCGGACACTCGTTGGTCCAACCGGGTGAAAACACAGACCGGTTCACTTTGAGATTACCGTCGGATGTGAGGAATCAGATACTAAACCGGAAATTTCAACGAGCTACAAGCTTGGTGATCTTGCCGAGAGAGAGTAGTTCGAGGAGAGGATATCGAACTGGTGGCGAGGGTAGTAACAGAGGGAGGTTTTCGAGGCGACTGGACCGGGGATTTAAGTCGGACCGGTGGGTTTTCACGATGGCGCCGCCGTTCTTAGTGAGGGCGTCGTCGGTTAGGTCTCCGAAAGTGGCCAGTACTAGTACAGCCGGCGAAGAGACCTCCGCCGACCCCATCATGCCGGCGTCGGCGGTGGACTCGGCCCATCCTCCGGTTTAA 1380 0.5609 MAPHSTFFVVWPAPSLTSILDPHDTFSSIYIPSPSHACFLFRCHFSLLHVIPETPSPTSLKFKSSKERLFNYTELATMTMSSITSQRKCCSFSTDHGIMLMPTSLILLLLSPALPLTAAQAGNTGPTDPYYNNFSPSMAIIVVILVAALFLMGFFSIYIRRCADNPNSSVRQLAGVAGRSRRQHRGLDPAVIESFPTLEYSVVKVHKIGKGALECAVCLNEFEESETLRLIPKCDHVFHPECIDEWLASHTTCPVCRTDLVPQPDESVHGVLPLNAETDIEAQRDAVEPPSELPNADVDREAAGPDVMYPNQTLNRNRTRGSRSSRTRRFPRSHSTGHSLVQPGENTDRFTLRLPSDVRNQILNRKFQRATSLVILPRESSSRRGYRTGGEGSNRGRFSRRLDRGFKSDRWVFTMAPPFLVRASSVRSPKVASTSTAGEETSADPIMPASAVDSAHPPV 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1372 459 ProSiteProfiles Zinc finger RING-type profile. 215 257 IPR001841 -
Bisa07g1372 459 FunFam E3 ubiquitin-protein ligase ATL6 176 263 - -
Bisa07g1372 459 SMART ring_2 215 256 IPR001841 -
Bisa07g1372 459 MobiDBLite consensus disorder prediction 427 441 - -
Bisa07g1372 459 MobiDBLite consensus disorder prediction 425 459 - -
Bisa07g1372 459 SUPERFAMILY RING/U-box 209 264 - -
Bisa07g1372 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 262 IPR013083 -
Bisa07g1372 459 MobiDBLite consensus disorder prediction 285 348 - -
Bisa07g1372 459 CDD RING-H2_EL5-like 214 257 - -
Bisa07g1372 459 PANTHER RING FINGER DOMAIN-CONTAINING 126 260 - -
Bisa07g1372 459 Pfam Ring finger domain 214 257 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1372 Bisa-ChrBisa07 36033996 36035375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1372 93 436 Rapid Response to Elicitors AT3G05200 44.693 2.12e-89 276